Wsmi037538.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- Hr39
- Assembly
- GCA_029784165.1
- Location
- CM056646.1:18993995-18996736[+]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 3.2e+04 -4.4 0.6 140 162 31 54 21 82 0.55 2 4 0.15 4.8e+03 -1.6 3.1 74 142 233 303 138 355 0.62 3 4 1.5e-10 4.7e-06 28.0 0.0 1 138 440 569 440 583 0.74 4 4 6.1e-78 1.9e-73 250.0 0.2 198 408 576 781 566 781 0.96
Sequence Information
- Coding Sequence
- ATGACAACATCGGAGTCAAGAGGAAACGTCTCGGTAACAACGATTAACTGTGAGAATGATCCCAGTCTTGGAGTGGCTAGCGTAGGCACCATGATTCCGGCAGGGACCAGCTCCGGTAGTAGCGGCGGTAGTAGTAGCAGTAATAGTAGCAGTAGTAATACTCCGAATGCCAGCACTGGGAACAGTGCGATATTTGGAAACGTTGGTATCCGAATAACAGTGCCAAAAATGGAAGAATCTGATGAGTCTGATACCGAACTTTCGAACATTGAAAAGACAGCGAACGTGAACATGCGAGAGGATAGTCGAGCCAGTAAGGGCTTGCCACGACCGATGTCCTGGGAGGGTGAGCTGTCCGAACCGGAAGCGATGATGATTGACAACGAAAACAGCTCCAGTGGTACTGGGCCAGAGCTAGCAACAGTCGATAAAACGGAACCCCAGGTAGTTACTAAGGAAGAACCAACCGGTCCGGGAATCACGGAGCCACTGGCTTTGACTGCGAGTCACAGTAGTAGTAGCTCTCCTCTTCCAAGCGGAATGATCAAACCGGAAGTGGGCATTCCATTGATCAGCCACAGCGTTGCTTCCAACAGCTACGCCAACACCATTCCaactagtaataatattaaCGCTAAGAAACTACCGGACGTTATAAATCTTAAGTATGAGCACGGCTTGGCGGAAAATCTTCCAGCGGTGAACTCACCTCTGTTGGTTCGCTCCAAAACGACGCTCCTTCCGGCCAATCCAAGTCCCGATTCTGCTATTCACTCCGTGTACACGCACAGTTCTCCGAGTCAATCACCGTTAACGTCTCGTCACGCAGTCTACACGCCCTCGCTGAGTCGCAACAACAGCGATGCCTCGTACAGCAGCTGCTACTCCTACAGTTCCGAGTTCAGTCCGACGCATTCCCCCATCCAAGGACGGCACAATATGTTCGCCAGTGGGTCCTACAACGGATCCCCGCTGCATCACTCAGTATTATACAAACCGATGATCGACAATGAACAGGCGCTGAAACTTGCCAACCAGGAGGAACCAGTCTTCGACAGCGAACATCTACCGTCCCCGGGAATCTCGCGGCAGCAGTTGATTAACAGTCCTTGCCCGATTTGTGGCGACAAAATCTCCGGCTTCCACTACGGCATTTTCTCCTGCGAATCGTGCAAGGGATTTTTCAAGCGAACAGTGCAGAACCGAAAGAACTACGTGTGCCTTAGGGGAGCGGCTTGTCCGGTGACGATTGCCACGAGGAAAAAGTGTCCTGCATGCCGATTCGAAAAGTGCCTTCAGAAGGGAATGAAGCTGGAAGCTATTCGAGAGGATCGCACTCGAGGTGGTCGATCCACCTATCAGTGCTCGTACACCCTGCCTGGTACGATTCTCAGTCCGTCGTTGTCCGGTAACGAAAACGGCGGCAATTTTCCGTACTCGAAATTTCCACCTGGCGGTCAGTTTCTGCCGGGCAACACCGGAGGGCATCCTGGTCAGCAGTTCAAAACTGAATCCCAACAGGAAGTCAAATGTAACAGCTCCGCAGCCGGAGCTCCAACTGGTAATAATGGAAGCAATCATGTCCGACCGGGTGTTCCACAGTTGCTGCAGGAAATTATGGATGTCGAACATCTGTGGCAGTACAACGCTACGGAACTGGCACGGTTGAATCAACCGCCGCCACCGGTAACCCCAGCAGCCATAGCTGCTAGTCCGTTACTCTCCAGTGCCGGCATCACCAGCGAGAGCAATCCGGATTTGATTGCCAATTTGTGTAATATCGCGGACCACCGGCTGTACAAAATAGTAAAGTGGTGCAAGAGTTTGCCACTGTTCAAGAACATCTCGATTGACGATCAAATTTGCCTGCTGATCAATTCGTGGTGTGAATTGCTGCTCTTTTCATGCTGCTTCCGATCGATGGCCACTCCGGGGGAAATTAAAATTTCCCTCGGGAAGTCGATCACGCTGGAGCAGGCCAAGCACAGTGGATTACAGACCTGCATCGAACGAATGCTCAATCTCACCGACCACCTGCGGCGGCTCCGCGTCGATCGTTACGAATACGTCGCCATGAAGGTGATCGTCCTGATGTCGTCGGACACATCGGAACTGAAGGAATCAGAGAAGGTTCGAGCCAGCCAGGAGAAGGCTCTGCAAGCCCTGCAAGCGTACACGTTAGCTCACTATCCGGAAACGCCGGCCAAGTTCGGGGAGCTGCTACTGCGAATTCCAGAGCTCCAGCGGACTTGCCAGGTTGGTAAGGAAATGCTAACAATTAAACCGAAGGAGGGCGAAGAACCGTCCTTCAACCTGCTGATGGAACTGCTTCGTGGAGAACATTAG
- Protein Sequence
- MTTSESRGNVSVTTINCENDPSLGVASVGTMIPAGTSSGSSGGSSSSNSSSSNTPNASTGNSAIFGNVGIRITVPKMEESDESDTELSNIEKTANVNMREDSRASKGLPRPMSWEGELSEPEAMMIDNENSSSGTGPELATVDKTEPQVVTKEEPTGPGITEPLALTASHSSSSSPLPSGMIKPEVGIPLISHSVASNSYANTIPTSNNINAKKLPDVINLKYEHGLAENLPAVNSPLLVRSKTTLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAVYTPSLSRNNSDASYSSCYSYSSEFSPTHSPIQGRHNMFASGSYNGSPLHHSVLYKPMIDNEQALKLANQEEPVFDSEHLPSPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAACPVTIATRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPGTILSPSLSGNENGGNFPYSKFPPGGQFLPGNTGGHPGQQFKTESQQEVKCNSSAAGAPTGNNGSNHVRPGVPQLLQEIMDVEHLWQYNATELARLNQPPPPVTPAAIAASPLLSSAGITSESNPDLIANLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMATPGEIKISLGKSITLEQAKHSGLQTCIERMLNLTDHLRRLRVDRYEYVAMKVIVLMSSDTSELKESEKVRASQEKALQALQAYTLAHYPETPAKFGELLLRIPELQRTCQVGKEMLTIKPKEGEEPSFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00400673;
- 90% Identity
- iTF_00948792;
- 80% Identity
- iTF_01524939;