Wsmi008807.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056644.1:103666175-103666840[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 3.9e-09 1.5e-06 29.5 0.1 3 43 13 52 11 53 0.87
Sequence Information
- Coding Sequence
- ATGAGTAACGCGGCAGTGAAACGTGGTGAACGGGAGCAGGCCATCAAGTTGGCGATTATTGCCATTAAGTTTGGCAAGTCGTTGCGGGCAGCTGCTGGAGAGTATGGCATACCCCGTACCACCTTGCTTCGCCACAAGCGGTTAAACGCTGGCCTGATGGTGCAAGCGGACCCGCTACATCCTACGATATCGATGAaggatgtgcaaatttgtaagCGCGGAAGACCACCGGTGCTCCACGAGGAACCAGAACGGGCATTCGAAAAGTACTGCTTGTTATGCTCGGAAAAGTTCTTCGGTCTAACATCCAGAGACATTCGTTTGCTTGCACCACAATTCGCGAACCAGCTGGGGATTCCGGTTCCCGAAAATTGGATTGCGAACGCAAAGGCAGGCCCTGTTTGGTTTCGGAACTTTCTGCGCCGAAGGCCGAACCTGTCGATGCGTTCACCCGAGTCGACCAGCATAGCCAGAGTCTCTGCTTTTAATCCCACAAATAAGGGCAAGTTTATCGATCTTCTACGCACAGTAGCCGAGAATATAACGTTCGAACCAAATTCCATCTGGAATCTGGACGAGACTGGAGTGACAACAGTTCAgaacaatcaaagaaatagttatcggtttccgttatactctactaaattttttggaactaaatattga
- Protein Sequence
- MSNAAVKRGEREQAIKLAIIAIKFGKSLRAAAGEYGIPRTTLLRHKRLNAGLMVQADPLHPTISMKDVQICKRGRPPVLHEEPERAFEKYCLLCSEKFFGLTSRDIRLLAPQFANQLGIPVPENWIANAKAGPVWFRNFLRRRPNLSMRSPESTSIARVSAFNPTNKGKFIDLLRTVAENITFEPNSIWNLDETGVTTVQNNQRNSYRFPLYSTKFFGTKY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524654;
- 90% Identity
- iTF_01524649;
- 80% Identity
- -