Wsmi022906.1
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:98361997-98362872[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.2e-16 4.6e-14 53.6 0.0 2 45 69 113 68 113 0.95
Sequence Information
- Coding Sequence
- ATGGTAAATAGCTACAGTTCGTCCAGTATGTCAACACCTACATCGCCACAGGGTGGTAATGATTCGGCAGCTGCTGCTGCAATGGTCCATAGTGTGTATAGCCAAGCGACCAATGCAAACCAATCTCCAATTGGAACAACCGGTACCAGCGGGACAACGACAATCCAGCCAGTTAAACGGAAAAGATCTGTCAATCCACAAGGCGATGAAAATTTTCTACGAGCACTAGAAGCGGTTCGATTTGGAGGAATTGGTTTTTGTAAGGCTGCTCGTTTATACGGTGTGAATAATCGAACACTGTGGTTAGAGTATAAGAAACGTGGCTATCCAATTAGTAGGCCTAGTATAAAAAGCCGGATAAAGCTAGAACCTAATATTTCACCTCCTCCTTCGACAACCCCGACTGGGGATGAGAATGCTTCTATGGAGCACTATGACACATCACTCTCGTCTCCTGCTTTGAACATGTCCCTGCAGCAGcatcaacaacagcaacaacaagcaCAACAGCAAGCGGTcgcacagcagcagcagcaggccGCCCAACAGCAACAGCAAGCCCAACAACAGCAAGcccagcaacagcaacagcagcaaacTCAACATCAAGCAACGAGTGAAAATGCGAATGCAGCGGCTGCAGCAGCCGCCGCTGCTGCTGCGGTGGCAGCATCATCCGCAACTCCACTTATGTGTCCTCCGCATGCTCATCCTATGGGGGTAATGGGATTCCTTGACACAAGACATGTAGATTTcaccaccgcagcggcggccgGGATCCACCAGATGTCCCGGCAACGATACCCTGATACAACCACCGTAAACATGAACACCGGAGCGGTTAACCTGCAGGGTTTGAACTTTAACTCGATGTAA
- Protein Sequence
- MVNSYSSSSMSTPTSPQGGNDSAAAAAMVHSVYSQATNANQSPIGTTGTSGTTTIQPVKRKRSVNPQGDENFLRALEAVRFGGIGFCKAARLYGVNNRTLWLEYKKRGYPISRPSIKSRIKLEPNISPPPSTTPTGDENASMEHYDTSLSSPALNMSLQQHQQQQQQAQQQAVAQQQQQAAQQQQQAQQQQAQQQQQQQTQHQATSENANAAAAAAAAAAAVAASSATPLMCPPHAHPMGVMGFLDTRHVDFTTAAAAGIHQMSRQRYPDTTTVNMNTGAVNLQGLNFNSM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01461806;
- 90% Identity
- iTF_01471277; iTF_01461806;
- 80% Identity
- -