Wsmi024706.2
Basic Information
- Insect
- Wyeomyia smithii
- Gene Symbol
- -
- Assembly
- GCA_029784165.1
- Location
- CM056645.1:124601512-124605728[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 2.1 8.3e+02 1.5 0.0 14 26 253 265 246 266 0.86 2 5 5.6e-10 2.2e-07 32.2 0.0 2 39 307 345 306 349 0.90 3 5 3.3e-11 1.3e-08 36.1 0.1 2 39 361 398 360 401 0.94 4 5 5e-17 2e-14 54.7 0.0 3 45 417 460 415 460 0.97 5 5 2.8e-16 1.1e-13 52.4 0.0 1 43 467 510 467 512 0.96
Sequence Information
- Coding Sequence
- ATGACGAGCCTTGGAATGGGTGTTGGAATAaacGGTTCAGTAATGGGCGTTTCGATGGGCTATCTAGATTTTGCTCCGGAGCCTCCTGCGCCGACAGCAACACCAGTGACAGAACATGTTGATATCAATTGTGCTCCTAGCCATGACACACGTGATCTGTCTAGTAAGTATTCTATTTCCAACAACGGTGACATCCGTGTGAAATTCGAAACACTACGATCACTAGACCCACAAGACGCGATACAACTGGATAATCAAGTTGCCCATCAAATGCACTCGCAGTCACAACAGCAACTACAACACCAGCAGATGTtgcaccagcagcagcaacaacagcattTAATACAACAGCAACATCAACATCAACAACAGCACCAGCAGCAACAAGCTCACCGACAGACGCCTCAGCCTCAACAAGTCGACCAGAGGTTATCGCCACATCAGCCTTCTCCACAACAGCAACCACAGCACCAGCAGCATGTCCTGCTCATCGATCAGCAATCGCAACACTCTCACCTTTCCACTCACAGCCCTGCATCAAATGCATCGAGTTCGTCTAGCCAGCATCATCCGGAAAATCTCGTCACCGTAGCTTCCTCTACCGCAGATAATGGTACGCCAATGGAAATGAAAACTAGAATTACGCTAAAGCAAGAGATTATAAGTGAAACCgaacatcagcagcagcatcaacAGCAGATGGAAGTCGAGCAAGATCAATCGTCGATGCACGGTATGGTCGTGACACCGGAGATCTCGGGAATGATGAGCCAGAGCCAAATGAGTGATATTTATCAATCAGATGCTAGTGAAGATTCAAAGGTTGGCATTCTGGACAGCTCAACGATGCAGTATACTAACCTAACCAGTCCAAATGCTAGCGATCCAAAGACACCAAGTGGTCCAAAAACATGGACGGCGGAAGATATGGAGTCTGCTCTGGACGCCCTACGGACTCACAATATGAGTTTAACGAAGgCTTCCGCTACATACGGCATACCATCGACGACGCTATGGCAACGGGCTCATCGACTTGGAATAGACACGCCAAAAAAGGAGGGCCCTTCTAAAACGTGGAACGAGGACTCGTTGAACAGTGCCCTGGAAGCACTAAGGACTGGCACGATATCAGCCAACAAGGCATCAAAAGCATTTGGCATTCCATCTTCCACCCTGTACAAGATTGCTCGACGGGAGGGAATTCGACTCGCTGCACCATTCAATGCTGCTCCCACCACATGGTCCGCAGAAGATCTTGATCGTGCCTTAGAAGCAATTCGGGCTGGTCAAACGTCCGTGCAAAAAGCAAGTACCGAATTTGGTATCCCTACTGGTACACTGTATGGTCGTTGCAAACGAGAAGGAATCGAACTGTCTCGATCCAACCCTACCCCTTGGTCAGAGGATGCTATGATGGAAGCTTTAGAGTCAGTCAAGCAGGGGCACATGTCGATAAACCAAGCTGCCATCCATTATAATCTACCGTATAGCTCGTTATATGGTAGATTCAAACGAGGCAAATATGACACACCAAACAACGCCAATTCGTCACATTCGAATCACGGAGGAGGGGGCGCCGGCGGAGGCGGTAACGTCGGCGGCATCGGAGGCATCGGAGGTAACGTGGTAACATCAGCGGCGACGATGGCCGGCGTTACCAGCAGTCCGCAGATGGAATTTAAAATAGAACCTCAACATAGTGAACATAGTCCAGAGAACACGCAACATTATAATCCTGCGCTAACAACATCACTAACAACGTCGTCCGCGCCGCCATCGACCCAAACCCACCACGTCGTACCGTCGCAATCGCCAGTCAACATTCACATCATAAACGCcaatcatcaccatcatcagtTGCAGCCGACTCCGCCGCCGCCGCATCAAACTGTTGCGACGACGCATCACACTTTGCAGGGAGCGCAACCACAGCTGATTCAACATCACATCATTCCGCAGCAGCACCACATAATATACCAGCAGCCGCTCCAGCAACTACAACAACAGCCGCAGTACCATCCGATGTATCACATCATAAAACAGGAAAACGATAGAAGTTGA
- Protein Sequence
- MTSLGMGVGINGSVMGVSMGYLDFAPEPPAPTATPVTEHVDINCAPSHDTRDLSSKYSISNNGDIRVKFETLRSLDPQDAIQLDNQVAHQMHSQSQQQLQHQQMLHQQQQQQHLIQQQHQHQQQHQQQQAHRQTPQPQQVDQRLSPHQPSPQQQPQHQQHVLLIDQQSQHSHLSTHSPASNASSSSSQHHPENLVTVASSTADNGTPMEMKTRITLKQEIISETEHQQQHQQQMEVEQDQSSMHGMVVTPEISGMMSQSQMSDIYQSDASEDSKVGILDSSTMQYTNLTSPNASDPKTPSGPKTWTAEDMESALDALRTHNMSLTKASATYGIPSTTLWQRAHRLGIDTPKKEGPSKTWNEDSLNSALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNAAPTTWSAEDLDRALEAIRAGQTSVQKASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMMEALESVKQGHMSINQAAIHYNLPYSSLYGRFKRGKYDTPNNANSSHSNHGGGGAGGGGNVGGIGGIGGNVVTSAATMAGVTSSPQMEFKIEPQHSEHSPENTQHYNPALTTSLTTSSAPPSTQTHHVVPSQSPVNIHIINANHHHHQLQPTPPPPHQTVATTHHTLQGAQPQLIQHHIIPQQHHIIYQQPLQQLQQQPQYHPMYHIIKQENDRS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00948660;
- 90% Identity
- iTF_00948660;
- 80% Identity
- -