Wpum004858.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- ZFY
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000170.1:4077972-4082445[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.00024 0.062 15.2 1.4 1 23 165 188 165 188 0.97 2 17 0.16 42 6.3 1.1 1 23 196 219 196 219 0.95 3 17 5.2 1.3e+03 1.6 3.2 1 21 225 245 225 246 0.87 4 17 0.0075 1.9 10.5 0.3 1 23 259 282 259 282 0.96 5 17 0.0073 1.9 10.6 1.5 2 20 296 314 296 317 0.92 6 17 6.1e-07 0.00016 23.4 1.1 1 23 337 359 337 359 0.98 7 17 0.00047 0.12 14.3 0.0 1 23 365 387 365 387 0.97 8 17 0.00058 0.15 14.0 0.2 1 23 393 416 393 416 0.97 9 17 0.019 4.8 9.3 5.8 3 23 565 586 563 586 0.97 10 17 4.6e-05 0.012 17.5 3.8 1 23 592 614 592 614 0.97 11 17 0.12 30 6.8 6.6 1 23 623 646 623 646 0.94 12 17 0.00066 0.17 13.9 3.1 1 23 652 674 652 674 0.96 13 17 5.1e-05 0.013 17.4 1.2 1 23 679 702 679 702 0.96 14 17 0.014 3.6 9.7 4.8 1 23 708 730 708 730 0.98 15 17 0.001 0.26 13.3 4.4 1 23 734 757 734 757 0.96 16 17 0.0035 0.9 11.6 0.3 3 23 765 785 764 785 0.98 17 17 2.2e-05 0.0058 18.5 1.5 1 23 791 814 791 814 0.97
Sequence Information
- Coding Sequence
- ATGCAACAACACGAAATCAGTTCGACATTGATGTCGATAAAATCTCGCGATGCGCCTACAGATGGAGAGAAGAGTTGCAATAAGGAAGCGTCATCGACATCTCCTGTATTTATACGAACTGTAGAAGTTTATTCCAGATGCTCTAAAAAACCATTAACATCTATTGATCTTACCACATCCGACGACGAGATAATTTACCAGCCATCAGATCAAAGTAAGTCCAATGCGAAAAGACCAGAATCCAAGAGTTCTAATAACCTGCCTACTTTAAAAAAGCATTTCCTTCGCAAATTACCCAATAAAATCATTGTAAATAATATCACATCAGACGAAGACACCGAAGATATAATATCAAAACTATCAGTGTACAAAATACTGTCTGAAGGTAATTACGGCTGTAAGCTCTGCAGCGCAAAGAACATCCGAACCATCCTCGAGAAAAAAGCGTTAATAGTGCGTCATTTACTAAGAGCTCATACATATTGTTACACCTACGAATGTTCAAATTGTTCAAGTACCTTTAAAAAAAAAGCCTGGTTAAAGAATCATTATGAAACAGAACATCGCGAAGACAATGACAAACTCTTCGAGTGCGCAAGATGCGAACACAGAAGTAAGGACGAAGATCTGCTGAAGCTGCATGCTTTGAGAAAACATGCGGCGATCTATAAATACGTATGCAGATGTTGCGCCAAGTGCTTCAAGACATGGAGGGCGAAAAATGAGCATGAAAAAATTAAAGAAAGGGGTAAAAAGTCTGAACGAAAACCAAGATACGTATGCAACTTGTGCAACAGTATTTTGAAAACGAAGCAAAAACTCATCATACATCTGAGGGACATTCACTCTGAGAACTTTTATAAGAATGGGGTGAAGATTCTTCGCAGCTGCAAATACTGCAACAAGCTCTTCATGTCCCGCAAGTCATTGCGCGAGCACTTGCCCAGTCACGACAAATCTTACGCAAGTAACCTTAACAAAAGCGGAGATAGTTGTAAAATCGAGGGTTATGCGTGCGACATATGCGGCAAACGACTGTCTAGTAAAGATCATCTAAAGAAACACGCGCGTGTTCACAGCGGCGAACGGCCTTACGTTTGCCCTGAATGTGGACAGGCCTTTGCTCTGCGTACAACAATGCGAATCCATGCACTTTCTCATCGGGGCGTTAAACCTTACATCTGTGAGCTCTGTGAACTTGGTTATTCGCAAAGATCTGCTCTCATGACGCACTGGAAAAGTAAGCACAGAGGATTGCCGGCGCCTCCACCCATCGAGATCCATCACTACTTTGACGAAGAGGGTAGGATTTTAGCACCATGTGAGTGGACGAAAGACTTCGCACGTTGGTTCAGGAAACAAAGTATCATCTCCAGGATAAGAGTGCGAACGGCCTCAGAACTCACCGAATCAAATTCCTCTAAACGCGAGCAGTTACCGGGTAAACCAACAATCAAAGTTATGCCTAAAAAGCTCATAAAATCGACTTCAAAAAGGAAACGTTTGGTTCCATCAAAAGTAGCCAACGAAAATGTCTCTGATAACGAGTCAGTGCATAACGAACCTCCATCAAAGAATATCAAAGGAGATATTACTTCTCAACCAGCAGAAATGCAAGATAAACCACTAAAAGTTAAAGAAGAGATTGCACAGCTGCTAATGTACAAAAAATTAAAGGGCGGTGGTTTCGGTTGTAAAGTTTGTCATCAAAGATATAGCCACAGATACAAAGTTAAGCAGCACATAAAAATGAAGCACGCGCCGCGTGAACTTTTCAAATGCGCTGATTGCTCTAAGACATTTAAGTCCAAATATCAATTCAAAGTGCACTCGAATCAACATCGCGAAAACTGCAGCGATTATTTGTTCTGCTGTGACAAATGTGACTACAGAGCTAAATCGAAGCATTATCTTAAAACTCACGAGATACGCAAACACACGACCGAATATAACTTCGAATGCGATCATTGCGGTAAGCGTTTCAAAATGAAAATGGATTTGAAGTTTCACTTGGGCACCCATGGCGCCTCTCAACACATGTGTGACGCATGCGGGCGAATGTACACTAGCCAAGACTCGCTTTACAAACATCGACGAGTAGTACATCTGAATGATTATAAGTTCCAGTGTCATATCTGCCATCAAAAGTTACTGACGCAAGAGAACTTCAATAGCCACATGGAATCTCATAAGAATCTTCATAGCTGCGACGAGTGCGATTTAAAATTCACGAAAAAGTATTACGTTACGAGGCACAAGAAACGAGTCCACAAGGTTGAGAAAACGAATCTCTGTCCCGTGTGCGGCAAAGCTTTCGTATGTATGGCGACTTTAAGAGTTCATTACCTGACCCACGCAAAAGTAAAGCCCTACATGTGTAACGTTTGCGGCTTCAGCTTTACGCAGCGTTCGTCTATGATGCTACATTGGAAAAGAAAACATCCGGATGCCGAAGATCCACCACCGCCTGTGATATTAACGAATTTTTTCGATGCCATACAATCCGAAGTGAACAAGCTCGTTGAAACGACTACGGACTTCCCTCCCAACGAATCCCGCCAATCTGGAACTACTGCGGTCTAG
- Protein Sequence
- MQQHEISSTLMSIKSRDAPTDGEKSCNKEASSTSPVFIRTVEVYSRCSKKPLTSIDLTTSDDEIIYQPSDQSKSNAKRPESKSSNNLPTLKKHFLRKLPNKIIVNNITSDEDTEDIISKLSVYKILSEGNYGCKLCSAKNIRTILEKKALIVRHLLRAHTYCYTYECSNCSSTFKKKAWLKNHYETEHREDNDKLFECARCEHRSKDEDLLKLHALRKHAAIYKYVCRCCAKCFKTWRAKNEHEKIKERGKKSERKPRYVCNLCNSILKTKQKLIIHLRDIHSENFYKNGVKILRSCKYCNKLFMSRKSLREHLPSHDKSYASNLNKSGDSCKIEGYACDICGKRLSSKDHLKKHARVHSGERPYVCPECGQAFALRTTMRIHALSHRGVKPYICELCELGYSQRSALMTHWKSKHRGLPAPPPIEIHHYFDEEGRILAPCEWTKDFARWFRKQSIISRIRVRTASELTESNSSKREQLPGKPTIKVMPKKLIKSTSKRKRLVPSKVANENVSDNESVHNEPPSKNIKGDITSQPAEMQDKPLKVKEEIAQLLMYKKLKGGGFGCKVCHQRYSHRYKVKQHIKMKHAPRELFKCADCSKTFKSKYQFKVHSNQHRENCSDYLFCCDKCDYRAKSKHYLKTHEIRKHTTEYNFECDHCGKRFKMKMDLKFHLGTHGASQHMCDACGRMYTSQDSLYKHRRVVHLNDYKFQCHICHQKLLTQENFNSHMESHKNLHSCDECDLKFTKKYYVTRHKKRVHKVEKTNLCPVCGKAFVCMATLRVHYLTHAKVKPYMCNVCGFSFTQRSSMMLHWKRKHPDAEDPPPPVILTNFFDAIQSEVNKLVETTTDFPPNESRQSGTTAV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00464139;
- 90% Identity
- -
- 80% Identity
- -