Wpum004853.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- -
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000170.1:4056003-4064014[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 21 0.018 4.6 9.4 0.8 1 23 55 77 55 77 0.95 2 21 5.8e-05 0.015 17.2 3.1 1 23 83 105 83 105 0.98 3 21 3.6e-08 9.3e-06 27.3 0.2 1 23 111 133 111 133 0.98 4 21 0.0035 0.89 11.6 3.8 3 23 141 162 140 162 0.96 5 21 2.4e-05 0.006 18.4 2.2 1 23 167 189 167 189 0.97 6 21 1.7e-05 0.0044 18.8 2.3 1 23 198 220 198 220 0.98 7 21 1e-05 0.0027 19.5 1.2 1 23 226 248 226 248 0.97 8 21 4.9e-05 0.013 17.4 1.9 2 23 255 276 254 276 0.97 9 21 1.1e-05 0.0029 19.4 0.5 1 21 282 302 282 303 0.96 10 21 0.024 6 9.0 0.1 1 23 377 400 377 400 0.93 11 21 0.0002 0.051 15.5 5.0 1 23 406 428 406 428 0.98 12 21 2.5e-05 0.0063 18.4 6.0 1 23 448 470 448 470 0.97 13 21 0.00021 0.055 15.4 4.8 2 23 476 497 475 497 0.97 14 21 0.0014 0.35 12.9 0.1 1 23 502 524 502 524 0.98 15 21 7.9e-07 0.0002 23.1 1.3 1 23 532 554 532 554 0.98 16 21 4 1e+03 2.0 1.4 1 23 560 583 560 583 0.93 17 21 0.00018 0.045 15.7 0.3 3 23 596 616 594 616 0.96 18 21 1e-06 0.00026 22.7 1.8 1 23 622 644 622 644 0.96 19 21 2.6e-08 6.7e-06 27.7 0.2 1 23 650 672 650 672 0.98 20 21 2e-07 5.2e-05 24.9 0.9 1 23 678 700 678 700 0.98 21 21 0.0005 0.13 14.3 0.8 1 21 706 726 706 727 0.96
Sequence Information
- Coding Sequence
- ATGAAATTCACATTCCCTCAAGAAAGTGAAGTAATACGCAACTTGGAGTTGATAAAAGATCCTGAATCGGAAGTGCAGAAAAAGGAAAAAACGGATCCCTTAGCAATTTTCAATGTTAAAGATAAATCTCCTCCGGGTGATCACCAAACTGTTTGTCTTGGGTACCAATGTCAACTGTGCTCGAAGTACTTCAAGGCGAAGAACCTATTCGATGGCCATATGATAGCACATAGCGATGCACGACCACATCAGTGTGACATCTGCCTGAAATCCTTCAAACGCACTAATACACTGTCAGTTCATCGGCGTATCCATACACGTGAGCGCAACTTTGTCTGCGACGTTTGCGGACGAGCCTTCGTCCAAGCCTCCCAGCTCACGAATCATCAACGTCGGCACTTTGACCGTTACACGCGCCATTGTGTCCTCTGTAACAAGGGCTTCTTTACCAATGCGGAATTACATAGCCATATGAACAGTAAACACGGCGCCAAGGAGCACGTGTGTGACGTGTGTGACAAATCTCTGCCGAACAGCCACTCGTTGGTAAGGCATACGAGGAGCCACGACCCAAATTTTCAGCCTATCAAGCACCAATGCGAATTCTGCGGCAAAACCTTCGCTTATAGAAATTCGTTGGTGTCTCACGTCAAGTCGCATACCGGGGAAAACAAGTACGACTGCCACCTCTGCGGAAAATTCGTGTCGTCGAAAGGATCGCTGCAGGATCACTTAAGGTTACACGGCGGTGAAAAGAGTCTTACATGCGACGTTTGCGGCAAAGCTTTCCACAAAAGGACGACCCTCGTTGTTCATAAAAGAACACACACCGGAGAAAAGCCGTATATTTGTGAAACCTGTGGCAAAGCTTTTACTCAGCACTCTACTTTGGTGATACATAGACGATTCATCTACCCCGAGCGCTATTACCCACTGACGATATTGGCCCAGGAAATCGATGACAAAACTACTGCCATTTCAGAAGGCAGACTCGCCTCCCTGGCAAGCCCTACATCAATAATCACGAAGAAGAAGCAGCAAATGAAGAAACTTGAAATTGAACCCATTATCGTGAAGATCGAGGAGAATTACGACGAAACAATGCTTGACGATGATCTTCCACTTGCCTATTATTGCAAGCCCTGTGGCGTATTTTTCGCTTCTCAGGAGCTCCTAGACTCACACTTATTGGCGTTGCATAAGGTGAAAAAGAGATACGACTGTGCGCATTGTGGTAAGAGTTGCCGTACTACCCTGAGTCTTCGACAACATATAAAGCGCCACAAGAATATGAAAAAAGTCGAGAAGGACAAACAGCAGCATCAACAAGAGGAAGTGGAGTTCACGTGCAAGACTTGCAACAGGATATTCCGTCACAAAAGCAATTATCAGAAGCACCTCGTAAGGCACACCGTGGGTGACCTAACGTGTAAACACTGTCCGAAAAAATTCCGCCTCTTTCGAGATCTCACGCGCCATGAAAAGACTCACTTTCTACCGAGCTACATGTGCAAGGAATGCGACTATGAGACTACTGTGTTAGCGGCCCTGAGTATACACATGACGAGACACACGGATAAAGCGGACTTACCTTTTAAGTGTAATGAGTGCGAAAAGCGCTTTAGGAAGGCCTCAGAACTCCAAGAGCATTATAATATACACTCCGGCGATAAGCCCTACATTTGCCAGGCGTGTCCAAGTGCATTTTTCCTAAGGAGACAACTCTCAGCACACTGCAGACGCTTGCATCCAGAATTGAAGGCGCAAAAAGTGACAAGCACCGCCTGTGACATATGCGGCAGGGTCTTGGCAACTAAGCGTTCCCTCTTTAGGCACAAGGAAAGCCATAATCCGATCAAGCTATATCTTTGCGACTATTGTGGCAAGAGCTTGAGCAGCGCTGAACATCTCAAGAAGCACCGGAGAATACACACTGGCGAAAAACCTTACGTGTGCGATATATGTGGAAAGGGCTTTACGGACTCAGAGAATCTCAGGATGCACAGAAGAGTTCATACCGGGGAAAAACCTTATAAGTGCGATCAGTGTCCGAAAGCCTTCAGTCAAAGGTCGACCCTGACCATTCACAGGAGAGGTCACACTGGGGAAAGACCTTATGTTTGCCAGATTTGTCAGAGAGGATTTTCATGTCAAGGAAACTTGACAGCTCATCAGAAATCCACCTGTGTCTAA
- Protein Sequence
- MKFTFPQESEVIRNLELIKDPESEVQKKEKTDPLAIFNVKDKSPPGDHQTVCLGYQCQLCSKYFKAKNLFDGHMIAHSDARPHQCDICLKSFKRTNTLSVHRRIHTRERNFVCDVCGRAFVQASQLTNHQRRHFDRYTRHCVLCNKGFFTNAELHSHMNSKHGAKEHVCDVCDKSLPNSHSLVRHTRSHDPNFQPIKHQCEFCGKTFAYRNSLVSHVKSHTGENKYDCHLCGKFVSSKGSLQDHLRLHGGEKSLTCDVCGKAFHKRTTLVVHKRTHTGEKPYICETCGKAFTQHSTLVIHRRFIYPERYYPLTILAQEIDDKTTAISEGRLASLASPTSIITKKKQQMKKLEIEPIIVKIEENYDETMLDDDLPLAYYCKPCGVFFASQELLDSHLLALHKVKKRYDCAHCGKSCRTTLSLRQHIKRHKNMKKVEKDKQQHQQEEVEFTCKTCNRIFRHKSNYQKHLVRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFLPSYMCKECDYETTVLAALSIHMTRHTDKADLPFKCNECEKRFRKASELQEHYNIHSGDKPYICQACPSAFFLRRQLSAHCRRLHPELKAQKVTSTACDICGRVLATKRSLFRHKESHNPIKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICQRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01219224;
- 90% Identity
- -
- 80% Identity
- -