Pnir046581.1
Basic Information
- Insect
- Pleistodontes nigriventris
- Gene Symbol
- -
- Assembly
- GCA_903653215.1
- Location
- CAHLDJ010000175.1:94911-102459[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0011 0.34 13.3 0.4 1 23 55 77 55 77 0.95 2 19 8.1e-06 0.0026 19.9 1.5 1 23 83 105 83 105 0.99 3 19 3.5e-08 1.1e-05 27.4 0.2 1 23 111 133 111 133 0.98 4 19 0.0033 1.1 11.7 3.8 3 23 141 162 140 162 0.96 5 19 6.9e-05 0.022 17.0 1.8 1 23 167 189 167 189 0.97 6 19 6.8e-06 0.0022 20.2 1.5 1 23 198 220 198 220 0.98 7 19 2.1e-05 0.0067 18.6 0.5 1 21 226 246 226 247 0.96 8 19 0.022 7.2 9.1 0.1 1 23 321 344 321 344 0.93 9 19 3.3e-05 0.011 18.0 3.9 1 23 350 372 350 372 0.98 10 19 2.1e-05 0.0067 18.6 6.0 1 23 392 414 392 414 0.97 11 19 0.0002 0.065 15.5 4.8 2 23 420 441 419 441 0.97 12 19 0.0038 1.2 11.5 0.1 1 23 446 468 446 468 0.98 13 19 9e-07 0.00029 22.9 1.4 1 23 476 498 476 498 0.98 14 19 0.2 64 6.1 0.4 1 23 504 527 504 527 0.96 15 19 0.00017 0.054 15.8 0.3 3 23 540 560 538 560 0.96 16 19 9.6e-07 0.00031 22.9 1.8 1 23 566 588 566 588 0.96 17 19 2.5e-08 8e-06 27.8 0.2 1 23 594 616 594 616 0.98 18 19 1.9e-07 6.2e-05 25.0 0.9 1 23 622 644 622 644 0.98 19 19 0.00044 0.14 14.5 1.7 1 21 650 670 650 671 0.96
Sequence Information
- Coding Sequence
- ATGAGAACTGCattctCTCACAGCGGCAGCAATTTACGCAACTTGGATGTGATTAAAAAACCTGAATCTGAAGTGCAGAATAAGGAAAAATTGGATCCCTTAACAATTTTCAATGTTAAAGATAAATCTCCTTCGGGTGATCGCCAAACAATTTACCTTGGGTACCAGTGTCCACTGTGTTCGAAGCGCTTCAAGGCAAAGAACCTGTTCGATGGCCATATGATAGCACATAGCGATGCTCGACCATATCAGTGCGATATCTGTCTGAAATCCTTCAAACGCACCAATACCTTATCAGTACATCGGCGAATCCACACTCGCGAGCGCAACTTCGTGTGTGATGTTTGCGGTCGGGCCTTCGTCCAAGCTTCCCAGCTCACGAATCATCAGCGTCGGCACTTTGACCGATATACACGCCACTGCGTTCTCTGCAACAAAGGTTTTTTTACCAATGCGGAATTACACAGTCACATGAACAGCAAACACGGTGCTAAGGAGCACGTCTGCGAGGTGTGCGGTAAGTCTTTGCCCAACAGCCATTCGTTGGTAAGACACTCGAAGAGCCACGATCCGGACTTCGAGCCCATTAAGCATCAATGTGAATTTTGTGGCAAGACTTTCGCGTATAGAAACTCGTTGGTCGCTCACGTAAAGTCGCACACCGGGGAGAACAAATACGACTGCCACCTCTGCGGAAAATCCGTATCTTCCAAAGGATCGCTACAAGATCACTTAAGatTCGCCTACCCCGAGCGGTATTATCCACTGACGATATTGGCCCAGGAAATTGATGAGAAAACAACTATTATGTCTGAAAGCAGAGAAGTTTCCTCACCAAGTCCTACATCAATAATCACGAAAAAGAAACAGCAAATGAAGAAACTTGAGGCAGAACCTGTTGTTGTAAAGATCGAAGACAACCACGATCAAATTGTACTCGACGATGATCTTCCACTTGCATATTATTGCAAGCCTTGTGGCGTATTTTTTGCCTCCCAGGAGCTTTTAGACTCGCACTTGTTAGCATTacataaagtgaaaaaaaggtACGACTGTGCGCATTGTGGTAAGAGCTGCCGTACTGCTTTAAGTCTTCGACAACATATAAAGCGCCACAAGAATACGAAAAAAGTCGAGAAGGAaaaacagcaacagcagcaagaGGAGGTGGAATTCACGTGCAAGACGTGTAGCAGGGTATTCCGTCACAAGAGCAACTATCAGAAGCACCTTGTCAGGCATACAGTGGGTGATCTAACGTGTAAGCACTGTCCGAAAAAATTCCGTCTCTTTCGGGATCTCACACGCCACGAGAAAACTCACTTTCTGCCAAGCTATATGTGCAAGGAGTGCGATTACGAGACTACTGTGGTGGCGGCGCTGAGTATACACATGACGAGGCACACGGACAAAGCGGACTTACCCTTCAAGTGCAACGAATGTGACAAGCGCTTTAGGAAGGCAACAGAACTTCAAGAGCATTACAACATACATTCAGGTGACAAGCCCTTCGTCTGCCAAGCGTGTCCAAGTGCATTTTTTCTAAGAAGGCAACTCTCAGCGCATTCCAGGCGCTTGCATCCAGAGCTGAAGGCGCAAAAGGTTACAAGCACGGCCTGTGATATATGCGGCAGGGTATTAGCGACTAAACGTTCGCTCTTTAGACATAAAGAAAGCCATAATCCAATCAAGTTGTATTTGTGCGATTACTGTGGTAAGAGTTTGAGTAGTGCTGAACATCTCAAAAAGCACCGCAGAATACACACTGGTGAGAAACCCTACGTGTGCGACATATGTGGAAAAGGATTCACCGACTCGGAGAATCTCAGAATGCACAGGAGAGTTCATACAGGAGAGAAACCGTATAAGTGCGATCAGTGCCCAAAAGCCTTCAGTCAAAGGTCGACCCTTACCATTCATAGGAGAGGTCACACTGGAGAGAGACCTTATGTTTGTCAAATCTGTCACAGAGGATTCTCATGTCAAGGCAACTTGACAGCTCATCAAAAGTCCACATGTGTCTAA
- Protein Sequence
- MRTAFSHSGSNLRNLDVIKKPESEVQNKEKLDPLTIFNVKDKSPSGDRQTIYLGYQCPLCSKRFKAKNLFDGHMIAHSDARPYQCDICLKSFKRTNTLSVHRRIHTRERNFVCDVCGRAFVQASQLTNHQRRHFDRYTRHCVLCNKGFFTNAELHSHMNSKHGAKEHVCEVCGKSLPNSHSLVRHSKSHDPDFEPIKHQCEFCGKTFAYRNSLVAHVKSHTGENKYDCHLCGKSVSSKGSLQDHLRFAYPERYYPLTILAQEIDEKTTIMSESREVSSPSPTSIITKKKQQMKKLEAEPVVVKIEDNHDQIVLDDDLPLAYYCKPCGVFFASQELLDSHLLALHKVKKRYDCAHCGKSCRTALSLRQHIKRHKNTKKVEKEKQQQQQEEVEFTCKTCSRVFRHKSNYQKHLVRHTVGDLTCKHCPKKFRLFRDLTRHEKTHFLPSYMCKECDYETTVVAALSIHMTRHTDKADLPFKCNECDKRFRKATELQEHYNIHSGDKPFVCQACPSAFFLRRQLSAHSRRLHPELKAQKVTSTACDICGRVLATKRSLFRHKESHNPIKLYLCDYCGKSLSSAEHLKKHRRIHTGEKPYVCDICGKGFTDSENLRMHRRVHTGEKPYKCDQCPKAFSQRSTLTIHRRGHTGERPYVCQICHRGFSCQGNLTAHQKSTCV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01524166;
- 90% Identity
- -
- 80% Identity
- -