Wpum033315.1
Basic Information
- Insect
- Wiebesia pumilae
- Gene Symbol
- lola_1
- Assembly
- GCA_018907045.1
- Location
- JACCHZ010000022.1:6404878-6410154[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 4.8e-09 2.8e-05 25.2 0.1 9 39 426 457 423 461 0.87
Sequence Information
- Coding Sequence
- ATGGAGGACGACCAGCAGTTCTGCCTTAGGTGGAATAACCACCAGTCCACCCTAATACAGAATTTCGACACATTATTGGAGTCCGGCACATTAGTCGATTGCACGCTGGCGGCGGAGGGGAAGTACCTAAAGGCCCACAAAGTCGTCCTCTCCGCCTGCAGTCCGTACTTTGAGGGTCTCTTGAGTGAACACTACGATAAACACCCAGTCTTCATACTCAAGGATGTAAAATTCAAAGAACTGAAGGCCATGATGGACTACATGTACAGGGGAGAGGTCAATATATCCCAAGACCAGTTGTCGGCCCTACTGAAGGCGGCCGAGTCCCTACAAATTAAGGGCCTGTCAGACAGCAGAACGGGGGGAAGCGGCGGCGCTACGACCGGCAAAGCCGACACGAGGCCATTGAAAACGGCGAGCTCGACGACGGCCTCGTCGTCGGTCGACATTCCACACGGGTCTTCCGGTCTAACCATAGAGAAGAACAGCAAAGTTCCTAGGCAGAGTCTGCAGCAGGTCTCCGTTAGTGATCTGCCCGAGGACTCGGCCAGCCCTCAACTCAGGGGTTTCTCCTCCAGGGAAGGATCACAAAGCCCGACCAGGAAAAAAAAGAGGTTGCGAAAAAGAAGTCTGGGTAACGACGATAATAATTCAATGGAAAACCACGAAGCATCAAATTCGAGCGACGTAAATATCAGCGCACCAGCGCTCGGAGTCGCGCCAGTCGCGGATGAGAAAAGCCATGCCGATCCTGCGGATTCGATCGGCAGGTCAGCCCTTATGCAGCAACTCACGAAACCCGCTGACGAGATGCTTCAGATACCCATCGAGAAACCTGAGCCCAGCGAAGAAATGATACAGCCAAAGTCTGAGTACCTGGACGACCAGGAGAGTGTGGAAGACCTCACGAATCTGGATGATGACATGAATGACCTCAACGAAATGGAACAAGATAATAGTAGAGCGGGCCCCAGTCATGATCCTTCCCAACATCCTGGTGGGTTGTTGTTGGGTCGTCGCGGTACAAAGCTAGCCTCCTCGCGGTTTCGTTCGCATACTACGTTCGTTCCCATCCCCACGGACGGCGGTGGCGCATGGGTTGGTGCCTCGCATTTCCTCGCGTACAGGAAAGGCGCTGGTCAGCCGTCGCCGTCGCCGCCTCCGCCTCCGCCGCCGCCGCTCACCGTCGACGTGGACGTGGACGTGGACGCGTTGCTGCGCTCGCTCGCCAGTAAGCAGGGCAGGAAGTATAGCTTAGAGTCGGTTAGGCTGTCGTTGGAGGCGATACTGCATCAGGGCATTAGCACGACCCAGGCCTCGGTGATGTATGGGATCAATCGGTCGACCTTGCAGTTTTATTTGAAAAAGTTGAACGTCGTGAGAAGGTGCAGGCGCTGGAAGCAGCCCAACGAGGTTCCTCGCGCTATCTTCAGACAATGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLSALLKAAESLQIKGLSDSRTGGSGGATTGKADTRPLKTASSTTASSSVDIPHGSSGLTIEKNSKVPRQSLQQVSVSDLPEDSASPQLRGFSSREGSQSPTRKKKRLRKRSLGNDDNNSMENHEASNSSDVNISAPALGVAPVADEKSHADPADSIGRSALMQQLTKPADEMLQIPIEKPEPSEEMIQPKSEYLDDQESVEDLTNLDDDMNDLNEMEQDNSRAGPSHDPSQHPGGLLLGRRGTKLASSRFRSHTTFVPIPTDGGGAWVGASHFLAYRKGAGQPSPSPPPPPPPPLTVDVDVDVDALLRSLASKQGRKYSLESVRLSLEAILHQGISTTQASVMYGINRSTLQFYLKKLNVVRRCRRWKQPNEVPRAIFRQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01379927;
- 90% Identity
- iTF_01524115;
- 80% Identity
- iTF_01524115;