Sagr002739.1
Basic Information
- Insect
- Sycophaga agraensis
- Gene Symbol
- lola
- Assembly
- GCA_018906755.1
- Location
- JACCIE010000084.1:113217-117464[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.8e-09 4.6e-06 26.6 0.0 9 40 411 443 408 448 0.89
Sequence Information
- Coding Sequence
- ATGGAAGACGACCAGCAGTTCTGCCTTAGGTGGAATAACCACCAATCCACCCTCATACAGAATTTCGACACATTACTGGAGTCCGGCACGCTAGTTGATTGCACGCTAGCGGCGGAGGGGAAATACCTAAAGGCCCACAAAGTCGTCCTCTCCGCCTGCAGTCCGTACTTTGAGGGTCTCTTGAGTGAACACTACGATAAACACCCAGTCTTCATACTCAAGGATGTAAAATTCAAAGAACTGAAGGCCATGATGGACTACATGTACAGGGGGGAAGTAAATATCTCCCAGGACCAGCTTCAAGCACTGCTGAGAGCGGCCGAGTCTTTACAAATTAAGGGCCTGTCGGATAGTAGAACGGGCGGTACCGGTACAACGGCCGGTAAGGCTGACACGAGGCCAACGAAAACGACAAGCTCGACAACCGCCTCGTCCTCGGCCGACATTCCACATGCGTCTTTCGGTCTAACCATAGAGAAGAACAGCAAAGTTCCTAGGCAGAGTCTGCAGCAGGTCTCCGTTAGTGACCTGCCCGAGGATTCGGCCAGTCCTCAGCTCAGGGGTCTCTCCTCCAGGGAAGGTTCGCAAAGCCCTACAAGAAAAAGAAAAAGGTTGAGAAGAAGAAGTCTCGGTCACGATGACACAAACTCCATGGAAAATCACGAAGCATCCAGTTCGAGTGACGTAAACATCAATGCTCCAGCGCTCGGGGTCGCTCCCGTCGCTGAAGAAAAGACACATGCCGATCCTGCGGATTCGATCGGCAGGTCAGCTCTTATGCAGCAACTCACGAAACCGGCTGATGAGATGCTACAGATAGAAAAACCAGAGCCTAATGAGGAGATGATACAGCCAAAGTCTGAGTACCTGGATGACCAGGAGAGTGTAGAAGATCTCACTCATCTGGATGATGATATGAACGATGAACTGGAACAAGACAATAGTAGAGCGGGCCCTAGTCGTGATTCTTCCCAACACCCTGGTGGGTTGTCGGTGGGTCGCGGTACAAAGCTCGCTTGTTCGCGGTCCCGTTTGCAACAAATCCCCGGCGGAGCGCCGCAGGCGGCCGTCGTCCCGGGTGCTTGGGGCGCCTCGACGCATTTCCTCGCATGCAGGAAAGGCGGCCCGAGGCGGCCGCCACTTGCCGCCGGCGTCGACGTGGCCGCTCTGCTTCGCTCCCTCGCTAGCAAGCAAGGCCGGAAGTATAGCTTAGACTCGGTTAGGCTCTCGCTGGAGGCAATACTGGAGCAGGGTGTTAGCACGACCCAGGCCTCGGAGATGTACGGCATCAATCGGTCCACTCTACAGTTTTATTTGAAAAAGTTGAACGTCGTGCGGCGACGGTGGAGGCGTCCGGCGCCCCAAGCACCCCAAGCACCCCATGCCGGCCAGTGA
- Protein Sequence
- MEDDQQFCLRWNNHQSTLIQNFDTLLESGTLVDCTLAAEGKYLKAHKVVLSACSPYFEGLLSEHYDKHPVFILKDVKFKELKAMMDYMYRGEVNISQDQLQALLRAAESLQIKGLSDSRTGGTGTTAGKADTRPTKTTSSTTASSSADIPHASFGLTIEKNSKVPRQSLQQVSVSDLPEDSASPQLRGLSSREGSQSPTRKRKRLRRRSLGHDDTNSMENHEASSSSDVNINAPALGVAPVAEEKTHADPADSIGRSALMQQLTKPADEMLQIEKPEPNEEMIQPKSEYLDDQESVEDLTHLDDDMNDELEQDNSRAGPSRDSSQHPGGLSVGRGTKLACSRSRLQQIPGGAPQAAVVPGAWGASTHFLACRKGGPRRPPLAAGVDVAALLRSLASKQGRKYSLDSVRLSLEAILEQGVSTTQASEMYGINRSTLQFYLKKLNVVRRRWRRPAPQAPQAPHAGQ
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01380068; iTF_01523956; iTF_01524115; iTF_00968928; iTF_00968739;
- 90% Identity
- iTF_01380068;
- 80% Identity
- iTF_01380068;