Basic Information

Gene Symbol
stc
Assembly
GCA_000956235.1
Location
NW:852344-857514[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 14 1.6 9.3e+03 -3.8 1.1 15 19 503 507 502 507 0.82
2 14 0.22 1.3e+03 -1.1 1.2 4 10 536 542 535 545 0.81
3 14 5.1e-06 0.031 13.8 12.9 3 18 552 567 551 568 0.92
4 14 4.6e-09 2.8e-05 23.5 16.8 1 18 604 621 604 622 0.98
5 14 0.0004 2.4 7.7 9.0 1 19 660 678 660 678 0.89
6 14 1 6.1e+03 -3.2 0.7 5 10 707 712 707 712 0.94
7 14 4.2e-05 0.25 10.8 13.1 4 18 725 739 718 740 0.86
8 14 2 1.2e+04 -4.6 1.6 5 10 769 774 769 774 0.90
9 14 0.0089 53 3.4 11.3 1 11 780 790 780 802 0.88
10 14 5.2e-09 3.1e-05 23.3 11.6 1 19 807 825 807 825 0.98
11 14 0.39 2.4e+03 -1.9 0.7 5 10 853 858 852 858 0.94
12 14 2 1.2e+04 -4.7 7.3 10 19 872 882 870 882 0.72
13 14 5.5e-07 0.0033 16.8 10.8 1 16 918 933 918 943 0.88
14 14 3.4e-05 0.2 11.1 14.3 1 19 950 969 950 969 0.97

Sequence Information

Coding Sequence
ATGGCCACCTGGGACGGCTCGTATCCGGAGGACCTGAGTTACCTGATGTACAACACCGACCGGAACGCGGCGGACGCTGCCCCGGGGAACTGGCCGACGACGTACTTCGCCGGGAACTCCGCGTATCTGCACGACATATCCGCGGGGGCGGCGGCGGGCTACTATCCTCCGGGGGCCGAGAACGGGAGTCGGGGACACGTCTACGAGCGGAGCAGAAGACCGACGGCGGCCTTCTACCAGGTCCCAGGCGCCCAGCACCCGTCGAACATGCAGGTGCCTTTGGAGAACAACGCCTATCAGGAACGTGCACTGCCAGACGCCTCGTCCGCGGATAACGCCCGGGCGTCGAACGGCGTCGCCTCGACGGCGTCGCACCACGCGCTGCCCTTCTCCCGCGGCGGCTATAGGCCGAGATCCACCAGGGGTAACCGGACGGCCGGCAAGCACGCgtcggcgccgccgccgccgccgccgtcgtcgtcgtcggcagACGACATCATCCAGTCCACTGTCGTGGAGAACTCCAATCTGCATCCCATGGCCAACGAATTTGTGCCCAACAGCCAGGCCAAGTTCAGAAGGGACGCCAGATTCAGGAGATACGATAACGGCAACGCGACGGGGAGTGGGTTCAACGCTTGCGCTCAGGAATTCAAGCCAAAGTCAGCCGTGTCGTCCGCGGATCACGTGTACAAGGGCGAGAGACGTTACGACAACAGAAGGGACGCGAATTACAGACAGAAGAGGCCGCAGGACACGCAGGCTCCGCCGAGATCCGGCTACAGGGATGCTCACAGGACGTACAACGCGAggaattacaataaatttcagaACGGCAGATATTACAATAGGAAGTATCAGTCGGACGTGTCTTTCGCAGAACAGAATGCCGCTGAAGAAGCCCACGCATCTGCCGCTAATTCAGTCGCTACGTTTAGTAATCAGGAAAATAGGGGTATTGTTGAAGAGATTCAAGAGGACGACTCGTCTGCAAAAATCAGCAGAGAAAGAACATTGGCACGCGAGGATAACGATTCGGAAAATATGTCTTCAAAGATCCTTGAAGCAAAACGAAACGATAGAGTTAAGCGATTCGCTAACGCGTCCAATTATCACAGATACAATTCGGACGAGATGCAGTCTGAACCCGGTACCAGGCGTAAAACAACAGCGGCAGCGGCGAAGTATACGCAAAGAAAGAACAACGAAACAAGTTATAAGGAGAAGAAAGTGGAAAATTGGAGAGATAGGACGGAAAGTAATGAGTCGACACCCGCACTGCCGGGGAAAAATCCgaggaaaaaatatgaaattgATGACGACGCGAGTCAGAGGGAACGATTAACCGAGCAATTGAACAAGGGAGGGTTGGAGTGCCTGGTCTGTTACGAGCATATCAAGCAGAGCGATTACGTTTGGTCCTGCAGCAATTGTTATCACGTGTTGCATCTGAGGTGCATAAAAAAATGGGCGAAGTCGTCTCAGGGCGagaACAACAGTTGGAAGTGCCCGGCTTGTCGGGACGTTAGTTTCCTCGTGCCCGAGGATTACTTCTGCTTCTGCGGCAAGATGAAGATGCCCGAGTGGAATCGCAGGGACGTGGCACATTCGTGCGGCGAGATCTGCGGTCGGCATCTGTCCAAGAAAAATTGCACGCACAAGTGCACCTTGCTCTGCCATCCCGGCTCTTGCCCGCAGTGCGTGGCGATGGTAACCAAGTATTGCGGTTGCGGACGAACGTCGAAGATGCTACTGTGTAGCGCTCAGCAGTTGTTGATGTGCGATTCGATATGCGAGAAGAATCTGTCGTGCGGCAAGCACACCTGCCAGAGGAAGTGCCATCAGGGGGAGTGCGGGCCTTGCGACAAAGTCGTGCAACaaacATGTTTCTGTAGTAAGAAAACTCAAGAGGTACCCTGCCGAGCCAACGTTGCAGATACGTATTGCTGTgataatatttgtaacaaaCCGTTAGACTGCGAGAAACATTATTGCCAGAAGATTTGTCATCCAGAGTCTTGCGAGTTCTGTTCCTTGATGCCCGAAAAAGTTACAATGTGTTGCTGCGGTCAGACGCCGTTAacggagaaaagagagagttGTATGGATCCTGTGCCGACCTGCGATAAAATCTGCTCGAAGCGCTTGAAATGCGGCCAGCCTAGTAATCCGCACATCTGCAAGGCACCGTGTCACACGGGGGAATGTCCGGAATGCGATTTGAACACCGACGTCAAGTGCCGATGTGGTAACATGGACCGCGAGATCGCTTGCAGGGACTTGACGAGCAAGGCCGACGACGCGCGCTGCGAGAAACGCTGCAAGAAGAAGAGATCCTGCGGTAAACACAACTGCAATCAGCTGTGCTGCATCGACATCGAGCACATCTGTCCGTTGCCGTGTTCAAAAAACTTGAGTTGCGGTCGGCACAAGTGCCAGGAGAGATGTCATATAGGAAGATGTTCGCCTTGCTGGGAGAGCAGCTTCGACGAACTGTATTGCGAGTGTGGCGCAGAAGTGATTTATCCGCCAGTCCCGTGCGGCACGAGGAGACCCACCTGCAACCGGCCGTGTTCGCGCGAGCATGCCTGCGACCACGAGGTACTGCACAACTGTCACAGCGAGCCCACGTGTCCACCTTGTAGCGTCCTGACCCAGAGATGGTGCCACGGCAGACACGAGCTCAGGAAGGCGGTGCCGTGCCACGTGAAAGAGATATCGTGCGGTCTTCCGTGCAGCAAGCCGTTGACGTGTGGACGGCATAGATGTATCACAATGTGTCACGCTGGACCCTGCGAAAAACCCGGCCAGCAGTGCACACAGCCTTGTGCCGCATTAAGAGAACTGTGCGGGCATATCTGCGCCACTCCATGCCACGAAGGCAAATGTCCAGATACGCCTTGCAAAGAGATGGTTAAGGTTACCTGCCAGTGCGGACACAGGACTATGAGTCGTGTCTGTGCAGATAATGCGCGGGAATATCAGCGGATAGCAAGCAATATATTGGCTAGTAAGATGGCCGATATGCAACTCGGTCACTCCGTCGATTTAGACGAAGTGTTCGGGCAAGGTGCGAAGAAACAAAATCAACTGAAGACTTTGGAGTGCAACGACGAGTGCAAGATTATAGAAAGAAACAGGAGGCTTGCATTGGGACTGCAGATCGTTAATCCGGACTTAAGCGGCAAATTGATGCCCAGATATAGCGATTACATGAAACAGTGGGCCAAGAAAGATCCGCACTTCTGTCAAATAGTCCACGACAAGTTGACGGAATTGGTGCAGCTAGCGAAAACGTCCAAACAGAAATCCCGGAGTTATTCGTTCGATGTTATGAACAGGGAAAAGCGTCATTTCGTGCACGAGTCGTGCCAGCACTTTGGCTGCGAGAGTCAAGCATACGATGAAGAGCCAAAGAGAAACGTCGTTGCCACTGCCGTGAAAGATAAGTGTTGGCTACCAAGTTACAGTTTATTAGAAATGATACAGAGAGAGAAGGGACAGAGAAAGGTTCCAGGTCCGGTACTCAATACTTCGAAGGGAAATAACTCTACAAaGACTGTTCTTTCGTTACCTGTAAAGCAGAATCAGCAATTGCTGCCATCATCGTCAGCTACTAAAATTGCTGACAAAGAAATCGATTATTTTGACTACCAAGGCTAA
Protein Sequence
MATWDGSYPEDLSYLMYNTDRNAADAAPGNWPTTYFAGNSAYLHDISAGAAAGYYPPGAENGSRGHVYERSRRPTAAFYQVPGAQHPSNMQVPLENNAYQERALPDASSADNARASNGVASTASHHALPFSRGGYRPRSTRGNRTAGKHASAPPPPPPSSSSADDIIQSTVVENSNLHPMANEFVPNSQAKFRRDARFRRYDNGNATGSGFNACAQEFKPKSAVSSADHVYKGERRYDNRRDANYRQKRPQDTQAPPRSGYRDAHRTYNARNYNKFQNGRYYNRKYQSDVSFAEQNAAEEAHASAANSVATFSNQENRGIVEEIQEDDSSAKISRERTLAREDNDSENMSSKILEAKRNDRVKRFANASNYHRYNSDEMQSEPGTRRKTTAAAAKYTQRKNNETSYKEKKVENWRDRTESNESTPALPGKNPRKKYEIDDDASQRERLTEQLNKGGLECLVCYEHIKQSDYVWSCSNCYHVLHLRCIKKWAKSSQGENNSWKCPACRDVSFLVPEDYFCFCGKMKMPEWNRRDVAHSCGEICGRHLSKKNCTHKCTLLCHPGSCPQCVAMVTKYCGCGRTSKMLLCSAQQLLMCDSICEKNLSCGKHTCQRKCHQGECGPCDKVVQQTCFCSKKTQEVPCRANVADTYCCDNICNKPLDCEKHYCQKICHPESCEFCSLMPEKVTMCCCGQTPLTEKRESCMDPVPTCDKICSKRLKCGQPSNPHICKAPCHTGECPECDLNTDVKCRCGNMDREIACRDLTSKADDARCEKRCKKKRSCGKHNCNQLCCIDIEHICPLPCSKNLSCGRHKCQERCHIGRCSPCWESSFDELYCECGAEVIYPPVPCGTRRPTCNRPCSREHACDHEVLHNCHSEPTCPPCSVLTQRWCHGRHELRKAVPCHVKEISCGLPCSKPLTCGRHRCITMCHAGPCEKPGQQCTQPCAALRELCGHICATPCHEGKCPDTPCKEMVKVTCQCGHRTMSRVCADNAREYQRIASNILASKMADMQLGHSVDLDEVFGQGAKKQNQLKTLECNDECKIIERNRRLALGLQIVNPDLSGKLMPRYSDYMKQWAKKDPHFCQIVHDKLTELVQLAKTSKQKSRSYSFDVMNREKRHFVHESCQHFGCESQAYDEEPKRNVVATAVKDKCWLPSYSLLEMIQREKGQRKVPGPVLNTSKGNNSTKTVLSLPVKQNQQLLPSSSATKIADKEIDYFDYQG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00385965;
90% Identity
-
80% Identity
-