Waur007461.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Wasmannia auropunctata
Gene Symbol
-
Assembly
GCA_000956235.1
Location
NW:633659-637999[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0001 0.0074 16.1 4.5 2 23 363 384 362 384 0.97
2 15 0.00017 0.012 15.4 2.6 2 23 391 413 390 413 0.95
3 15 2.9e-06 0.00022 21.0 1.8 2 23 501 522 500 522 0.97
4 15 1.1e-05 0.00082 19.1 3.6 1 23 528 550 528 551 0.96
5 15 0.0001 0.0076 16.1 1.0 1 23 556 578 556 578 0.97
6 15 2.6e-06 0.00019 21.1 1.3 1 23 600 622 600 622 0.98
7 15 8.5e-07 6.2e-05 22.7 1.2 1 23 628 650 628 650 0.97
8 15 6.8e-06 0.0005 19.8 2.4 1 23 656 678 656 678 0.98
9 15 0.00095 0.07 13.1 0.2 1 23 684 706 684 706 0.99
10 15 3e-05 0.0022 17.8 1.1 1 23 712 735 712 735 0.92
11 15 1.3e-05 0.00099 18.9 1.3 1 23 741 763 741 763 0.98
12 15 0.00029 0.022 14.7 4.7 1 23 769 791 769 791 0.98
13 15 3.8e-06 0.00028 20.6 0.4 1 23 797 820 797 820 0.97
14 15 2.7e-06 0.0002 21.1 0.9 1 23 826 848 826 848 0.96
15 15 6.5e-07 4.7e-05 23.0 4.8 1 23 854 876 854 876 0.99

Sequence Information

Coding Sequence
ATGACGAaagtaataatgaataaagaaATGCCGTTAAGTGTGGAGTGGACACCAAATGCATACATGAACAATTCTTTGGATCACTTGTTGCCGGGGGATAGAAATCAggatttcttaataataaagcaGGAAGCAGAGTTCTTTCAGAGCACTCTGAATTCGCAGTCCGTGCAAAACAAAGTTGTACAAGTTTTGTCCAAAGAGAGGGACAAGGAAATCAAGCAACAAAATAGTTATTCAGATGCAGTGGCAACACCCTGTCAAACGGACTCTTTAAATCAGCTGCCCAAAAGATTGACCGACAGTTCAGAGAGATTATATAGTAGAGGTCGCATTGACGTAATAGAGATGACGGTAGACTCAACGTtgaactataaatattttttcgtttacgAAGATCAGCTTTCCGAGTTTGTCGTGCTGAAGGCCCTCCGTAGCGATACGGCCAAAGAGGTCGCGGCGAATCTGTTAGATGTATTGGGGATCATAGGGGCACCGCGAGTGCTACAGAGCGGCAATGGACGTAAGTTTGCTGAACAAGTTGTACACGAGCTACGCTCGCTGTGGAATGATTTGTTCATACTGCACGGGGACGCGTCTAAGTGTGAAGTTAGCTACAGGGATTTTAAGAGCTCGCTCGAATCCTGGCTGAGAAAAAATCCAACTAGGACCTGGTGCGAGGGGCTGAACTCCGTGCAGATCGTTCACAACACGACGTACCGCTGTCAGAACGGCAGAGTTCCATATGACATACTGTTCAGGCAAAATGCACGCGAGAGTTTTCGAGGTGTAGAAAAAGATGTGGAAAGTCTGAGGACGGAGGAAGAATGGATCAAATATTTGTCGAATAAGAGGAACGGAGATGTGGCTGCGACGACGGAAGACGCGCAGAGTACATCAATTATCAATCAATGCGAAGAAAACAAAAACGCACTTTCGAAAGCCGACGATGTAAATATCTTTAGTTATGTCAATGTGAAAAATGAATGTCTGACGAGTAATGCTGCGTGCACGCTGGATTCAACGTCTACAGATGAGACAGACGTGAAGAATGAATCGAAGATCAACGAAGATACTCAATCCCTCAAATGCAAGTACTGTCAAAAACAGTACATGAAAATAGGGCATTTGAAGAACCACATGAGGACTCACAAAGCGAAGGAGGTTCTCCATTGTAAGCTGTGCAATAAAACATTTAGCGTTCCGAGATTGTATGCGAAGCATATGAAGCAGTCGCACGGACAGGATAAATTAGCCGATAAGAAAAGAGAGGTACCAGTCAGAAAAACGAGAAACAATGCCAATGCATTTACAGCTACGTCTAATAAGGAAAAATCTGTGATTCAAACAGCACGTGGGACGTCCAAGCTCGAGGCTTCGAACGAAGACTGCGATTCGCTGGACACGAGAGAGTCTCCCGGCAAGGCCGGTAAGAGCCCTAATCAAAGCGGGAGACGGAAGCCGCCCGCGGAGAGTCGCGTGTCGAAGGTGCAATCTTTAAAGTGTACGTATTGCAAGCAAAAATTCAGCTTCCCGAGCGTGCTGGAGAGGCACATGCGATCGCACACGAACGAACGGCCGTACGTGTGCGAGGTGTGCAACAAGAGCTTCAAGCAGCTAGGTCATCTCAGTCAGCACTCGCTGACCCATCACGACTATCGGTCCTTCCAGTGCACGGTATGCGGCGTGAAGTTCGACTCGCTGGATCTGCTGAAGCAACACGCGCACTCGCACAAAGGTGACAcgacaacggcggcggcggcggcggcgtccaAGATACGCGACGTTTATCGTCTGTTCGAGTGCGACAGCTGCAAGAAGGTGTTCACGACCAAGAGCGTGCTGGAGCGGCACATATTCACGCACACGCAGGAGCGTCAGTACGACTGTAAGGTGTGCGGCAAGCGGTTCAAGCAAGCGGGCCACGTCAAGTCGCACATGCTGGTGCACACGGGCGAGCGGCGCTTCCAGTGCACCGTGTGCTCGAAACGCTTCAGCCTGTCGAACTCGCTGAAGAAGCACATGTACGTGCACAACGGCGAGAAGCCGTACCAGTGCGACGTGTGCGGCGCGCGCTTCCTCGAGAAGCGCAATCTCAACGGCCACCTGCTGACGCACACCAACGAGCGTCCGTACTGCTGCAAGATCTGCGGCAAGCGGTACACCCTGGCGGACACGCTGCGCCGTCACGTCAGCGCCGCGCACGAGGACGGCCGCACGTATCAGTGCGAGATCTGCGCCAAGATGTTCAAGCAACTGGCGCATCTGTCGGTGCACAAGAAGGTGCACAACGATGAGCGGCCGTTCCAGTGTCACCTCTGCGAGAAGAACTTCAAGCACAAGAACGTGCTCAAGTCACACCTGGCGATCCACGCGAACGTACGGCCGTTCGAGTGCGACGTGTGCAAGGCGACGTTCGTGAGGAAGACGAATCTGCAGACGCACATCTCGTCCGCGCACATGAACGAGCGCCCGTACACCTGCACCATCTGCGGCAAGCGCTTCAAGCAGATCAGCCATCTCAACGGCCACGTGGTCGTGCACAGCAATCTGATGCCGTACAAGTGCGACTACTGCGACCGCCGGTGCAATCGACTCGACAACCTGAAGAAGCATATGCGCCTCCATACGAAGAACAAGGAATAA
Protein Sequence
MTKVIMNKEMPLSVEWTPNAYMNNSLDHLLPGDRNQDFLIIKQEAEFFQSTLNSQSVQNKVVQVLSKERDKEIKQQNSYSDAVATPCQTDSLNQLPKRLTDSSERLYSRGRIDVIEMTVDSTLNYKYFFVYEDQLSEFVVLKALRSDTAKEVAANLLDVLGIIGAPRVLQSGNGRKFAEQVVHELRSLWNDLFILHGDASKCEVSYRDFKSSLESWLRKNPTRTWCEGLNSVQIVHNTTYRCQNGRVPYDILFRQNARESFRGVEKDVESLRTEEEWIKYLSNKRNGDVAATTEDAQSTSIINQCEENKNALSKADDVNIFSYVNVKNECLTSNAACTLDSTSTDETDVKNESKINEDTQSLKCKYCQKQYMKIGHLKNHMRTHKAKEVLHCKLCNKTFSVPRLYAKHMKQSHGQDKLADKKREVPVRKTRNNANAFTATSNKEKSVIQTARGTSKLEASNEDCDSLDTRESPGKAGKSPNQSGRRKPPAESRVSKVQSLKCTYCKQKFSFPSVLERHMRSHTNERPYVCEVCNKSFKQLGHLSQHSLTHHDYRSFQCTVCGVKFDSLDLLKQHAHSHKGDTTTAAAAAASKIRDVYRLFECDSCKKVFTTKSVLERHIFTHTQERQYDCKVCGKRFKQAGHVKSHMLVHTGERRFQCTVCSKRFSLSNSLKKHMYVHNGEKPYQCDVCGARFLEKRNLNGHLLTHTNERPYCCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANVRPFECDVCKATFVRKTNLQTHISSAHMNERPYTCTICGKRFKQISHLNGHVVVHSNLMPYKCDYCDRRCNRLDNLKKHMRLHTKNKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01406725;
90% Identity
-
80% Identity
-