Vina016382.1
Basic Information
- Insect
- Volucella inanis
- Gene Symbol
- br
- Assembly
- GCA_907269105.1
- Location
- OU026154.1:132218842-132223224[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 1.9e-14 2.7e-11 44.0 0.0 3 43 291 331 289 333 0.91 2 3 0.017 24 5.8 0.0 27 37 362 372 353 377 0.87 3 3 8.9e-17 1.2e-13 51.5 0.0 3 41 400 438 398 441 0.93
Sequence Information
- Coding Sequence
- ATGAACCACCTCAAGTGGATGGGCCATACGGCAACCATCTTAGACATCCAGAAGACACTTAAAACTGATCCAGACACTTGTGACATAACGCTCGCGTGCCGAGGTAAATCGGTGAAAGCCCATCGTTTTGTGCTGTCCTCGTGTAGTGATTTACTTCGTGACATTTTAAATGATGTGCCATTTGGTCAGGAAGCTACTGTGATGGTGCCTGATGTGAAGGGTAGCCTATTGGATAGTGTTATGAGTTTTATTTACATGGGCGAGACAAGTTTGTCATCGACGAATTTATCTGATTTTCTGGAGGCTATCAGCATACTCGGTATTAAGAGCGCCATTAGTTTTGAATGTGCTCCCAGTGGTGGTGGCTCAggaaataatagtaaaaatgttgGCGAGATAACTGAAATGGAAGAGGAATTAATGGAAGGCGAACCGGAGCAGGAAATCGTCGAAAAGGATGAGGACGAGGATCAAACTGTAGCAGAAAACCATAGCGTACGAGAATTGGAGTTCCTTGAGGTGTATAATGAGCAAGAAAAAATTAGTTACACCATTGAGAACATTACACCAAACAATGCCAACGAATATATTCTTACAGAAAGTTCTGGCACCTTCACTCTGACGCCGAATGCAAAAATCGATGGCACCGAAGTGTCAACACTTGTTGACAAACCCGATGAAGACCAAGAACAAGCCTTGATGGAGCATTTTAGTGATCCAATTGGCGATAGTAGCCACTGTTCTAGCACAGATATCAAAGAGGAAAAGtgtaataaaaaactaaaagatgAATTTAGTGAATTTCAAGCACTTAGTCCAGAAGATTCGAAAGGATATCAAAATTTCAACGAGACACAATCAGCTCGAGTTGAAGCTCTAGAAAATGCTGTCCTTGCTGTCGTTGACGAAGGAATGAGTTTACAAAAAGCCGccattaaatacaatatttccaaAACAGTTCTTTGGCGTAGAGTGAAGAAGCATCCACTTTACATGAAGACAACACGTGAAAATCCTTTAATTACAGCGGCATGTGAACGTTTAAAAAATGGCGATTCATTGAAAAGCATTAGTCAAGCGTTAGATATTCCGATGTCTACATTGCATCGACATAAAGTAAGACTAGCGCAAGAAGGACGATTACCAGAATATGTTACCTTTAAAAAACGTGGCCCAATGTCAAAAGAAATGCTTAAGGAGAAATTAACAAAAGCCGTACAAGCATGTCTTGGTAGTGGAATGTCTCAAAATCATGCAGCAAATGTATTTGATGTACCGAAGAGTACATTATGGCgacatttacaaaagaaagTTTATCGTTCCGATAGTTCAAACGATGTTAGTATTAAGGAAGAAATAGTTTTACCCTAG
- Protein Sequence
- MNHLKWMGHTATILDIQKTLKTDPDTCDITLACRGKSVKAHRFVLSSCSDLLRDILNDVPFGQEATVMVPDVKGSLLDSVMSFIYMGETSLSSTNLSDFLEAISILGIKSAISFECAPSGGGSGNNSKNVGEITEMEEELMEGEPEQEIVEKDEDEDQTVAENHSVRELEFLEVYNEQEKISYTIENITPNNANEYILTESSGTFTLTPNAKIDGTEVSTLVDKPDEDQEQALMEHFSDPIGDSSHCSSTDIKEEKCNKKLKDEFSEFQALSPEDSKGYQNFNETQSARVEALENAVLAVVDEGMSLQKAAIKYNISKTVLWRRVKKHPLYMKTTRENPLITAACERLKNGDSLKSISQALDIPMSTLHRHKVRLAQEGRLPEYVTFKKRGPMSKEMLKEKLTKAVQACLGSGMSQNHAANVFDVPKSTLWRHLQKKVYRSDSSNDVSIKEEIVLP*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00311727;
- 90% Identity
- iTF_01522467; iTF_01521997; iTF_01520878; iTF_01521233; iTF_01522778;
- 80% Identity
- iTF_01521997;