Vbom060960.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- Aef1
- Assembly
- GCA_949129095.1
- Location
- OX422142.1:185982857-185983522[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 0.0012 41 6.8 0.2 22 48 94 120 83 124 0.86 2 4 1.6e-05 0.52 12.8 0.0 21 50 121 150 119 152 0.87 3 4 0.0039 1.3e+02 5.2 0.1 21 51 149 179 147 180 0.87 4 4 0.0001 3.3 10.3 0.1 21 47 177 203 175 208 0.89
Sequence Information
- Coding Sequence
- ATGACTAATTGTGAAATCGTTATTGTTGCAACTACCGATGAACCAGCCACAGATTTACAAATACCCTTCAATGTAATAACATCAGCGGCAACAGTTTCAGCTACTGGTGTCACAACTACAACTCATCACCTCGCTCCACTGCAACAACATAcggaacagcagcagcagcagcagcaacaacaacagcagcaacaacaattacTAACATCAGAAGCTCTCCAGCAAGTGCAGGCGAGTGTGCTGTCACCTCATTTGGATCGTCCGCCCACCAATGGTCCCGAAAAGCCATTCCAATGTAACATTTGCGAAAGGCGATTTCGACAATTAAGCACACTAACGAATCATGTAAAAATTCACACCGGCGAAAAACCATACAAATGCACGATCTGCGACAAAACCTTCCGACAATCGAGCACCCTCACGAATCACATGAAAATTCACACCGGCGAAAAACCCTTCATCTGTTCGTACTGCCCCAAGCAGTTCCGCCAATTGAGCACACTAACTAATCACCTGAAAATCCATACGGGAGAGAAACCCTTCGAATGTGCCGTCTGCAAGAAACAATTCCGCCAATCGAGTACGCTCAACAATCACATAAAGATTCATGTCATGGACAAGGTGTACATACCGGTGAAAATCAAAACCGAAGAAGACGAAGGATGA
- Protein Sequence
- MTNCEIVIVATTDEPATDLQIPFNVITSAATVSATGVTTTTHHLAPLQQHTEQQQQQQQQQQQQQQLLTSEALQQVQASVLSPHLDRPPTNGPEKPFQCNICERRFRQLSTLTNHVKIHTGEKPYKCTICDKTFRQSSTLTNHMKIHTGEKPFICSYCPKQFRQLSTLTNHLKIHTGEKPFECAVCKKQFRQSSTLNNHIKIHVMDKVYIPVKIKTEEDEG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223723;
- 90% Identity
- iTF_01521398;
- 80% Identity
- iTF_01521398;