Vbom028610.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Volucella bombylans
Gene Symbol
-
Assembly
GCA_949129095.1
Location
OX422140.1:320370316-320372391[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 10 0.00062 0.26 14.1 0.5 2 23 113 134 112 134 0.96
2 10 0.015 6.6 9.7 2.7 1 23 214 237 214 237 0.95
3 10 0.67 2.9e+02 4.6 1.6 2 21 245 264 244 265 0.79
4 10 3.4e-07 0.00014 24.4 1.8 1 23 314 336 314 336 0.95
5 10 3.7e-08 1.6e-05 27.4 1.6 1 23 343 365 343 365 0.99
6 10 8.1e-08 3.5e-05 26.3 1.2 3 23 380 400 379 400 0.99
7 10 1.9e-06 0.00081 22.0 0.4 1 23 406 428 406 428 0.99
8 10 6.5e-07 0.00028 23.5 0.2 1 23 434 456 434 456 0.98
9 10 1.2e-07 5.1e-05 25.8 1.0 1 23 460 482 460 482 0.99
10 10 0.018 7.6 9.5 0.6 3 19 488 506 487 512 0.86

Sequence Information

Coding Sequence
ATGGATGTATCCGAGGATGAGTTTTCAACAGATAGTGATTCTGAAACACAGACGTCCGAAGTTGAAGATAAAGAATCCTCGCCAAGTTATGATAGTGAAGAAACCAAACCAAGGACCAGAACTCGCAGTGGAGTTATTCGCAAAAATCTACATCGggtaaagaagaaaagagaaaccAGAGTAAATGTTAAAACTCTGGTAAAGCCTAAAAAGGCAGAGCAAAATTCTGAAAAGTCGAAAAAAGAAGATTGTGAATTAGAAAAAACTGTCGTTAATCCCGAGATCAAATCAGACATCGAGGAAGATGAGTGCATACCAAACGGTTGCAAAACAATTGAGTGCTTTATTTGCGGTTGTAGcttgaataaaatttataatttacgcgctcaCATGGCGTCACATGCAGAGGACGAAAACTTCGACGTTGAAGCCTTCAAGGAATCAGATATATTTGATGTCCTGAACCCGCATAAAAGAAACATCGATTCAAACATAATTAAGAACTTTGTGATTCAGGAAATAAAAGCGAAACGTTACTCTCAGTTCTATTGCATTCTTAACGAAGCAGCAATTGAGTTGCATATCAGTGATTCTGAAACAGACTCTGACGGAGCTGGCGATCTGGTTCCTCACAACAATTACCGATGTGAATTATGCAAAAAGAACTTTGATCGTCGCTATAAGGTACTATTCCATCAAAAGACTGCACACGACAAGTCAGACCTTACTGTCGAATGCGATTACTGTCTTAAGAAGTTTGTTTGTATGAATCTCTTGATCCACCACCTGAAAACGCAGTGCGAAAGCGATGAGAAACCAGTGCCTTGTACCGAACGTTTTATGAAATTTCTTCTCAAGGCCAATCTTGACTATTACGCCAGTTTAGCTCAAGCCAGAGAACAACGAAAGCTTCACAAATTAACTGAAACTAAGAAGACATACATCTGTCCCACATGCAACAAAACTTTCACTCGCCAAGAACACTTGAATAGGCATAGTGCAGTGCACTTGCCCGATGAGATGAAATTCGAATGTCCTGTCTGTGATCGACGATTTAATCGAAAGGACAACATGCGATCACACATGAAGACCCACACTGAAGAGGGAGCACGTAATGCTGAGTCTCGAAAGATACTTTGCTCATATTGTGGTCGAAGTTTTAGTAGTAAATCAAATTACGTGGTACATATGCGTCGCCACACTGGTGAGAAACCATACAAATGTGACGTGTGTGGCAAGGGATTCCCCAAATCGACAGACTTAAATTCGCACAAGATCACCCATACAGGAGAGAAGAATTTCATTTGCACAATCTGTAATAAGGCCTTCGCAAGATCAGCGGTTCTTTCGAAACACATGCGTGTGCATAGTGGCCCATATCCATGCACTTTCTGCCAAAAGACTTTTACAAAACCAAGTGCTCTTACGGTTCATTTACGAACGCATACAAACGGACGGGTGTGCTTCTGTATCATATGCAATAAGTCTTTCGAGACCAAGAACGAATTGGATGCTCATTTTGCTGCCACGGGGCATAATAACGAACCTAAGCGGGTGATCGTGGTGAAAGAGCCGCCGCCTAAAGTAAAAGTTACTAAGAAAGTTGATGAGGAACGAACTGTGCCATCGCCAACATCATCACAAACGTTTGCACTAGAAATAAAGACAAATGATGATCCCCTGGAAATCAAAGAGGAAGAATGGCGAACGACTAAAGTTAAAGTGCCTGTCAACGAAGCAATCCAAAGTGTCTTGCAAAGGTCCACCAGCGCGAACACAGCTCCATCGGAGATTGTTGAAAATGCTGACGTATTGAAAGAGGAATCTGCCAAGTTGGAAAATGATGTGATGGCTTCTTTTTCTCCAATGGATGCTGGCTATGATGATGACATTCAATACAGCGATTGGTAA
Protein Sequence
MDVSEDEFSTDSDSETQTSEVEDKESSPSYDSEETKPRTRTRSGVIRKNLHRVKKKRETRVNVKTLVKPKKAEQNSEKSKKEDCELEKTVVNPEIKSDIEEDECIPNGCKTIECFICGCSLNKIYNLRAHMASHAEDENFDVEAFKESDIFDVLNPHKRNIDSNIIKNFVIQEIKAKRYSQFYCILNEAAIELHISDSETDSDGAGDLVPHNNYRCELCKKNFDRRYKVLFHQKTAHDKSDLTVECDYCLKKFVCMNLLIHHLKTQCESDEKPVPCTERFMKFLLKANLDYYASLAQAREQRKLHKLTETKKTYICPTCNKTFTRQEHLNRHSAVHLPDEMKFECPVCDRRFNRKDNMRSHMKTHTEEGARNAESRKILCSYCGRSFSSKSNYVVHMRRHTGEKPYKCDVCGKGFPKSTDLNSHKITHTGEKNFICTICNKAFARSAVLSKHMRVHSGPYPCTFCQKTFTKPSALTVHLRTHTNGRVCFCIICNKSFETKNELDAHFAATGHNNEPKRVIVVKEPPPKVKVTKKVDEERTVPSPTSSQTFALEIKTNDDPLEIKEEEWRTTKVKVPVNEAIQSVLQRSTSANTAPSEIVENADVLKEESAKLENDVMASFSPMDAGYDDDIQYSDW

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01542385;
90% Identity
iTF_01522835;
80% Identity
-