Vbom045724.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Volucella bombylans
Gene Symbol
-
Assembly
GCA_949129095.1
Location
OX422141.1:168179694-168182306[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.025 11 9.1 0.2 2 23 66 88 65 88 0.96
2 16 0.00075 0.32 13.9 0.8 1 23 94 116 94 116 0.98
3 16 0.0021 0.88 12.5 1.6 1 22 190 211 190 212 0.91
4 16 2.6e-06 0.0011 21.6 1.7 1 23 218 240 218 240 0.97
5 16 0.068 29 7.7 0.4 8 23 253 269 246 269 0.89
6 16 0.0031 1.3 11.9 2.7 1 23 279 302 279 302 0.95
7 16 5.6e-05 0.024 17.4 1.3 3 23 395 415 395 415 0.97
8 16 6.2e-07 0.00027 23.6 0.5 1 23 421 443 421 443 0.98
9 16 0.012 5.3 10.0 0.1 1 23 450 474 450 474 0.92
10 16 0.0015 0.64 12.9 1.0 1 19 480 498 480 501 0.91
11 16 0.058 25 7.9 2.3 1 23 539 561 539 561 0.97
12 16 0.00011 0.048 16.4 2.7 1 23 597 619 597 619 0.97
13 16 4.5e-08 1.9e-05 27.1 1.7 1 23 718 740 718 740 0.98
14 16 0.00045 0.19 14.6 0.9 3 23 748 768 746 768 0.98
15 16 3.5e-05 0.015 18.0 0.4 1 23 775 797 775 797 0.98
16 16 0.0014 0.6 13.0 6.8 1 23 803 825 803 826 0.95

Sequence Information

Coding Sequence
ATGGATAACTTCACGGTCCCCGAAATAGACAATATACCGACTGGAATCGGCACCTTGGTTCCTATTCAGGAAGAAGAGTGTTGTTCCTTGAATGTACCCCCACTTGAACCATTATTTCCACCAGTCGAGCCAGCACCGACCGGTCAGCATATGCTAATAGAACCGGAGGAGGGCCCTGCACCACAGAAACAGCTTTCGTGCGATTTGTGTGCGGAGACTTTCTCGTCGGTGCAAGTGTTACGTCTACATAGACGAGTGCAGCACATTTTGACTAAGGAATTCCGTTGTCGCAAGTGTACCGCGTCGTATAATTTCGAATCAAATCTGGTGCTCCATATGGCTTCGCATGTTCCCCGTTGCAGTAAAAACATCGAATGTCCCGAATATCGCATGAGACAAGCGATCGATTCAAGTGCAGCCGATGTGAGAAGGAATTTGAAGGGGTATTACGAGAAGCACTTGGCCAAGGCACACAAATTTGGATCCGATGGGACCGTAGAAGAGATTCTGGCCAAAGTCGCGGCAAATGCGAGAAATCGTCCGAAATCGAAGAAACCCCAAGGAAGGTACGTCTGCCAGAAGTGTGGCAAGAGTTTTCTCAAACCGTGTCTATTGAGGCGCCACGAAGTAGGTCATTCGAGTACGAAACCATTCCAATGTACCGAATGTGACCAGAGATTCACACAGAAGACATCTTTAGCGAGGCACAGGCTGTTGCATGAGGGCGTTAAGGATTTCAGTTGTCCCAAATACAGTTTTAGCTTTGCCCAGAAAAACAACCTCATCACCCACATAAAACGGACGCACCCGATGGACGCAGATTTGGATAAGATGTTTTCGTGCGATTACTGTGCATGTGTATTCACCAAACTGAATAGTCTCAATCGCCACAAGGCCATGACGCATCCAGAGGCGGGCAATACTTTTGACGACGATACGTTCAACGATGACGATGGTAACAATGTCAATTTTGCCAAAGTGATGGAGCAATTGAAAAGCCTCCAGGAATCCATTGTGATTATGGATATGCAGTCGCCGGAGTTGGAACTTTCGCTGATGAAACCACCATCGCCTGGACCGAAAGTTCGCACAATCACACTCGTCGATACCCTCAATCCAACGAAAAAGAAGACCTACCAGACAGTCCGAAAAATAATCCACAAAGACCAGAAGACTCTGGGATGCATGTCGTGCGACAGAGAATTCAAAAGGCCCTTCGATTTGTTGAGACACCTTCGAACTCACACAAAAGAAAAGCTCTTCAGTTGTGAGCATTGCGATAAAACCTTCGCCACAAGTGCCGGTCTCAAGGCTCATGTTAATATCCATCTCGAGGGGGAGAAAATCTATGCCTGCGCTGTGCCTGAATGTGGGAAACTCTTTTCGTCCATCAGAAAGTTGGATATCCACTCGAGAACTCACACCAGCATTGTATCGTACTCCTGCCCCGTTTGCTCAAAAACTTTCTCCTCCAAAGCTGGGTTTTCTGGTCACAAACACCAGACCGAGGACAAAGAAATCGACATAGTTCGACCACTCCTTATGCAACCGGTACGTATCGACTCCAATGAAGTGGAAGAGGCTGAGAAGTCCGAAGAGTACTTGAAAAGAAGTCACCAGTGCTACATTTGCGGATTGAAAATGCAGAAGTTGTCCCATTTAAGGGCCCACGAAGCCACTCACCAAGATCCATACGGCCGAAAAGCCGTATGTCTGCGAAATTTGCAATGCAAAATTCATGACGCGTTCCTTGCTCAAGCGACACATGATTTCACACACGTGCGCAACTTTGCTTGTCCGTATTGCAGCGAACGCTTCAAAACGAGCGATAACTGCAAGAATCACATACTGACACATGCTCGCTGTCTGTTAGCGAGTCCGGAACCAGCTCTCGTGGAGGATGACACACAGCTCCCAGACATAAAAGAATTACCCGAAGAAGATCTATCTGAAGCACTATCCCAAACCTGCATTGCGGTAGTTCAAAGACCAAACAAAAATCTCTCACCCAAGTTCATTCAATTGGAAATGGTTCAGAGCTGTAAGAAGCATAACCACAAAAACCTTATCGTCGAGAAGGTTGCTAATACGTCGAAGAAGTCGCCAAAGAAACTACTTAAACGTGCCTGGAACCTAAACAACAAAGCCAGTCACCGATGCAGTGTGTGCGGGAAAGTTTTCACCAAGGCAAGTGACCTGACACGCCATGCACGGACtcatacaaaagaaaaaccattcgGTTGCAATTTGTGCGAGAGAAAATTCGCCCTGATGTCCACTTTGATGCAGCACATGAAAACGCATGATACTATGAGAGAGACATATGACTGCCAGGTGTGTGGCAAGAAGTATAAATCGAGGAAGGTTCTGGTTGTACATTTGAGAATTCACACAGGTGAGCGACCGTTTCATTGTGGTGTTTGCAAAAAGTCATTTAGAACGTCGGGTCATAAGATATCGCATATGAAGGCGcaccacaaaaagaaaaagtga
Protein Sequence
MDNFTVPEIDNIPTGIGTLVPIQEEECCSLNVPPLEPLFPPVEPAPTGQHMLIEPEEGPAPQKQLSCDLCAETFSSVQVLRLHRRVQHILTKEFRCRKCTASYNFESNLVLHMASHVPRCSKNIECPEYRMRQAIDSSAADVRRNLKGYYEKHLAKAHKFGSDGTVEEILAKVAANARNRPKSKKPQGRYVCQKCGKSFLKPCLLRRHEVGHSSTKPFQCTECDQRFTQKTSLARHRLLHEGVKDFSCPKYSFSFAQKNNLITHIKRTHPMDADLDKMFSCDYCACVFTKLNSLNRHKAMTHPEAGNTFDDDTFNDDDGNNVNFAKVMEQLKSLQESIVIMDMQSPELELSLMKPPSPGPKVRTITLVDTLNPTKKKTYQTVRKIIHKDQKTLGCMSCDREFKRPFDLLRHLRTHTKEKLFSCEHCDKTFATSAGLKAHVNIHLEGEKIYACAVPECGKLFSSIRKLDIHSRTHTSIVSYSCPVCSKTFSSKAGFSGHKHQTEDKEIDIVRPLLMQPVRIDSNEVEEAEKSEEYLKRSHQCYICGLKMQKLSHLRAHEATHQDPYGRKAVCLRNLQCKIHDAFLAQATHDFTHVRNFACPYCSERFKTSDNCKNHILTHARCLLASPEPALVEDDTQLPDIKELPEEDLSEALSQTCIAVVQRPNKNLSPKFIQLEMVQSCKKHNHKNLIVEKVANTSKKSPKKLLKRAWNLNNKASHRCSVCGKVFTKASDLTRHARTHTKEKPFGCNLCERKFALMSTLMQHMKTHDTMRETYDCQVCGKKYKSRKVLVVHLRIHTGERPFHCGVCKKSFRTSGHKISHMKAHHKKKK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01521325; iTF_01522024; iTF_01522824;
90% Identity
-
80% Identity
-