Vbom055882.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422142.1:107471101-107471784[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.9e-08 1.4e-05 27.1 0.0 2 34 10 42 9 50 0.90
Sequence Information
- Coding Sequence
- ATGCCTAAATGCAGCCACAAATACCGTGAAAATGACCTTCAAAAAGCTCTTGAAAGTGTCAGGACGCAAGCTATGTCTAAAAAGGCAGCGGCCAAATTGTATGGGGCCCCTCGAACAACGCTTATATTTCGAttaagcaaaaaatttattaaaacaagacCAGGTCCTAGGACAGTTTTAACTGCCGTCGAAGAAGAAGCCTTGGAAGAATGGATAACCACATCCCAGCGAAAAGGTTTTCCTAAAAGAAAAGAGGATGTGCTCCATGCCGTTAAAGAGTTTCTCGATGGAGACAAACGGGACCATCCATTTGGGCCAGAAAACATGCCAGGGAATGGCTGGTTTAAGGCGTTTTTAAGTCGACACCCTTCCATTTCACTAAGAACACCAGACCCGGTTACATCGGCAAGTGCAACATTGGGATCTTCGGACATAAGATCGTGGTTTGTTATGATTGAAGATTTCCTGAAGGAAAAGGATTGGCGGCAGATTCTAGACGACGGTAGCAAGATTTTTAACGGCGATGAAACCAACTTCTTACTGTGTCCTAAAACCAAAAACGTGTTGGCAGCAAAAGGTGCTCGTAATATATACGAGATTGATAGAGGACTGGCGAAATCTAACCTAACAGTTACGAGGAGcgctcggtatcggggtgaagctgtggttgtatatagaaattga
- Protein Sequence
- MPKCSHKYRENDLQKALESVRTQAMSKKAAAKLYGAPRTTLIFRLSKKFIKTRPGPRTVLTAVEEEALEEWITTSQRKGFPKRKEDVLHAVKEFLDGDKRDHPFGPENMPGNGWFKAFLSRHPSISLRTPDPVTSASATLGSSDIRSWFVMIEDFLKEKDWRQILDDGSKIFNGDETNFLLCPKTKNVLAAKGARNIYEIDRGLAKSNLTVTRSARYRGEAVVVYRN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01223331;
- 90% Identity
- iTF_01520904; iTF_01520911; iTF_01520915; iTF_01520981; iTF_01520918; iTF_01520925;
- 80% Identity
- -