Pper052573.1
Basic Information
- Insect
- Pocota personata
- Gene Symbol
- -
- Assembly
- GCA_963082735.1
- Location
- OY720433.1:12163896-12164465[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 7.4e-10 7.3e-07 30.5 0.0 2 36 9 43 8 51 0.90
Sequence Information
- Coding Sequence
- ATGTCTAAATTCAGCCACAAATACCGTGAAAACCTCCAAAAAGCTCTTGAAAGTGTTAGGACGCAAGCTATGTCTAAAATTGCAGCGGCGAAATTTTATGGGGTCCCTCGAACAACACTTATATTCCGATTAAgcgaaaaatttgttaaaacaaaACCAGGTCCTAGGACAATTTTACCTGCCATCGAAGAAGAAGCCTTGGAAGAAAGGATAACCACATCCCAACGAAAAGGTTTTCCTAAAAGAAAAGAGGATGTGCTCCATGCCGTTAAAGAGTTTCTCGATGGCGACAAACGGGACCATCCATTTGGGCCAGAAAACATGCCAGGGAATAGTTGGTTTAAGGCGTTTTTAAGTCGACACCCTTCTATTTCACTAAGAACACCAGCAACAATGGGATCTTCGGACATAAGATCGTGGTTTGTTAAGATTGAAGATTTACTGAAGGAGAAGGATTGGCGGGATATTTTAGAAGACGGTAGCAGGATTTTTAACGGTGATGAAACCAACTTCTTACTGTGTCCTAAAACCAAAAACGTGTTGGCAGCAAAAGGTGCCCGTAATATATAA
- Protein Sequence
- MSKFSHKYRENLQKALESVRTQAMSKIAAAKFYGVPRTTLIFRLSEKFVKTKPGPRTILPAIEEEALEERITTSQRKGFPKRKEDVLHAVKEFLDGDKRDHPFGPENMPGNSWFKAFLSRHPSISLRTPATMGSSDIRSWFVKIEDLLKEKDWRDILEDGSRIFNGDETNFLLCPKTKNVLAAKGARNI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01520904; iTF_01253679; iTF_01520911; iTF_01520946; iTF_01520981; iTF_01520918; iTF_01541367; iTF_01520925; iTF_01520915;
- 90% Identity
- -
- 80% Identity
- -