Vbom002669.1
Basic Information
- Insect
- Volucella bombylans
- Gene Symbol
- -
- Assembly
- GCA_949129095.1
- Location
- OX422140.1:11575379-11575936[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.5e-09 1.1e-06 30.6 0.0 2 40 17 56 16 61 0.91
Sequence Information
- Coding Sequence
- ATGGTgcggaaatataaaaaaaagggtaaACGAAGCCAAGAAGTTGATGAAGAATCCGTTAATTTAGCAGTTGAAGAAGTAATGCACGGACGGTTGTCTTATAGAAAAGCTTCATTGaaacacaacattaaaacaTCAACTTTGCAAAGCAGAGTAAAGAAACTGAGAGATAGAGTTAGCAAAGAAAGACCGGTACGTATTTTTCATTCCAAATTCACAAGCTTGCAAGTCTTTTCCTTGGTCGAAGGGGAGCGTTTAAATGACTACATTAGTAATTGCTGCAAGATGCATTATGGGCTCACGACGGTACAGATTCGGAAACTTGCTTATGAATATGCAAAAgcattaaatttaaagtatCTAGCGAAATGGAACGAAAATCAAATGGCTGGCTTAGAGTGGATGCGTAAATACAGGGAGCGAAATTCAAATCTCAGTTTGCGAAAGCCAGAAAACACCAGCGCTGCACGATCATTCGCTTTTAATAAAACTGCAGTTACAGAGTTCTATAATAAttctatatataatatatatatctaCTGTCTTAGACACTCCTAA
- Protein Sequence
- MVRKYKKKGKRSQEVDEESVNLAVEEVMHGRLSYRKASLKHNIKTSTLQSRVKKLRDRVSKERPVRIFHSKFTSLQVFSLVEGERLNDYISNCCKMHYGLTTVQIRKLAYEYAKALNLKYLAKWNENQMAGLEWMRKYRERNSNLSLRKPENTSAARSFAFNKTAVTEFYNNSIYNIYIYCLRHS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00991699; iTF_01192578; iTF_00991697; iTF_00025955; iTF_00794318; iTF_01509525; iTF_01091671; iTF_00693708;
- 90% Identity
- -
- 80% Identity
- -