Veme001719.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- nfxl1
- Assembly
- GCA_000949405.1
- Location
- NW:771696-775714[+]
Transcription Factor Domain
- TF Family
- zf-NF-X1
- Domain
- zf-NF-X1 domain
- PFAM
- PF01422
- TF Group
- Zinc-Coordinating Group
- Description
- This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 1.1 7.2e+03 -3.3 1.1 15 19 126 130 125 130 0.81 2 17 0.15 9.8e+02 -0.5 0.8 4 10 161 167 160 167 0.95 3 17 5.6e-08 0.00038 20.0 15.1 1 18 175 191 175 192 0.98 4 17 2.6e-05 0.18 11.5 11.1 2 18 230 245 229 246 0.92 5 17 0.47 3.1e+03 -2.1 0.4 6 10 271 275 270 276 0.91 6 17 1.5e-05 0.099 12.3 12.3 1 19 281 300 281 300 0.93 7 17 0.00022 1.5 8.6 8.8 1 18 336 353 336 354 0.97 8 17 0.0049 33 4.2 7.3 1 12 388 399 388 399 0.94 9 17 0.93 6.2e+03 -3.0 1.2 6 10 409 413 408 413 0.91 10 17 9e-08 0.00061 19.4 12.9 1 19 419 437 419 437 0.91 11 17 0.00059 4 7.2 11.7 9 19 485 495 483 495 0.90 12 17 0.00052 3.5 7.3 8.0 1 12 505 515 505 515 0.95 13 17 0.86 5.8e+03 -2.9 5.8 14 18 547 551 547 552 0.89 14 17 0.0043 29 4.4 8.4 1 12 588 599 578 599 0.81 15 17 2 1.3e+04 -5.4 3.2 14 18 613 617 613 621 0.57 16 17 0.00075 5 6.8 16.7 3 19 630 646 629 646 0.92 17 17 0.002 13 5.5 14.1 1 16 691 705 691 711 0.93
Sequence Information
- Coding Sequence
- ATGCAGAAGTTCAAGAGGGCTCAGGCGCAGAACAAGCTGTCCATCGAGAGGCACTTGGAGGCCAACGCGTCGTTGAATTCGTccagcgaggaggaggacgagacGAACGAGGAGGACGTTCAGAATGCGGTGGGCAAAGTGCTGTCGGCGTACCAGGGACAGGGCATGGACGCGGAGAGAGTGATGTCGTATCTGGTCAACTCCTTCCAGACCAGCAGCGCTGTTTGTTTGATATGCATATCGACTGTCAAGAAGATGGATCCAATATGGAACTGCGACAAGTGCTACGCGTTCCTGCACATGTCCTGCATCCTGCACTGGATCAACGACAGCTTGAGCTACAAACGGGCTAGGGGAATCACTCCGATATGGGCATGTCCCAAGTGCCGTATGGAATACGATCAGGAGCAGATTCCGCGATTGTACAGATGCTTCTGCAAGAAGACCGTGGACCCGCCGCACCAGCCCTGGGCGATTCCGCACTCGTGCGGCGAAACCTGCGGCAAGCCCCTGCAGCCGGAGTGCGGCCACAAATGCGTGTTGCTCTGCCACCCCGGCCCGTGTCCGCCCTGCGCCAAGATGGTGTCGGTTAAGTGTTACTGCGGCAAGCTACCGGCGCAACCGCGACGCTGCAACGCCAAGGACTGGAGCTGCGGGACTGTGTGCAACAAGAGATACGACTCCTGCGCGCACAGTTGCAGCAGCCTGTGCCACACCGACGAGTGTCCGCCTTGCGTAGAGGTGACACCGCTCAAGTGCCGTTGCAAGAGCAACGAGAAGGTGGGCGAGTGCCACGAGGGCACGTGGGTCTGCGAGAAGCCCTGCAACAGGAGGTTCTCCTGCAACGTGCACAGCTGCGAGAGCACGTGCCACCTGCCTGGCGATTGCGGCAACTGTCCTCTGGAGAAGAACAGATCCTGCCCCTGCGGGAAGAAGCGATACGAGGTCTCCTGCAGGCGACAGCAGGTGCCGACGTGCGGTGACACGTGCGGCAAGCTGCTGGACTGCGGGTCGCACTTGTGCAACATGCGCTGCCACGCCGACCGCTGCGGCCAGTGCCTGGAGGTCGTGACGAAGGCGTGCCGGTGCGGCAGCTACACCAAGGAGATCGCCTGCGCGAAGGAGTTCCACTGCAACAAGAAGTGCATTCAGATGCGTTTATGCGGCAGACACTTGTGCAACAGGAAATGCTGCGACTGCATATCAAAGAGCACGTCGAATGCCTGCGAGAAGACGTGCGAGAACACGCTCAACTGCCGCAAGCACAAGTGCGCCGCGCCCTGCCACAGCGGCCCCTGCTACCCGTGCACCCGAACGGACGTCATACAGTGTCGGTGCGGCGGCAGCAAGATAACGGTGCCGTGCGGCACCAGGAAGAGAATCAAGCCGCCGCTGTGCAACAAGTCCTGCAAGATCCCGCCCATCTGCCACCACAGCAAGAGGGAGACGCACAAGTGCCATCACGGCCCGTGTCCGCCGTGCAAGAAGGTCTGCGGGCTGACGCACAAGAGATGCGGCCACACCTGCCCGGCCACTTGTCACACCAAGGTCTGGGTGAAGAGCAGAGCGAACGGCATAAAGGCGCAGCCGGTCGGGCCCTGGGACAGGCCCAAGGACGTTATGGAGCTCAAGACTCTGCCGTGTCCGCCGTGCGAGGTTTCCGTGCCCGTGACCTGCCTCGGCGGCCACGAGACCCGGCCCTGGCCGTGTCACATGTCGAGGCCGAGCTCCTGCGGCAGATCCTGCGGCCGGCTGCTACCCTGCGAGAATCACGCCTGCGAGTCGACCTGCCACAAGCTACAGACACCCGACAACGAGTCCAACGGCGGCGGTGCTCCGTGCATGGAGTGCGAGAGGGAGTGCAATTTTGCACGGCCGCCGGGTTGCACGCACGCGTGCCCGCGGCCTTGCCACCCGGCGCCGTGTAAACCGTGCAAGCAACTGGTCCGGGTCTCTTGCCACTGCGGTATCAGCACCCTGTACCGGCATTGCGTCAACCTGACGTCTGCAACGAGCAAGGAACGGGACGAATTACTCAAGTGTGGCAACCAGTGCCCGAAAAATTATCCATGCGGCCACCGTTGCGTCAACGACTGTCACTCGGGAGAATGCAAAGGTGGAGAGGGATGCAGCAAGAAAGTCAGATTGTGGTGCAAGTGCAAGCGGATCAAGAAGGACTATCTCTGTTCGCTTCTTCAAAAGGAGCCGATTACCGTAGAGTGCGACGGCGTGTGCGAGTCACTGAGGAACGAGAGGAAGGAGGCCCAGGAAGCTATGATAGCGAGGAAactggaggaggaggagctgCGCAATCGGGAGGAGATCGAGAAGTTCGAGAAGAAGTTCAAGCCACGACGGAAAAGGAAGGACAAGTACGACAGCGCGAAACAGTCCCGGGGGAGCGCAAAGAATAGGTATCGCAGCGCATGGATCCTAGCGATTATCGTGAGCATTGTGGGGATAATAATAGCGTATCTGACCGCTCCTGACTTAAACGTACCCGGACTGAGCTGA
- Protein Sequence
- MQKFKRAQAQNKLSIERHLEANASLNSSSEEEDETNEEDVQNAVGKVLSAYQGQGMDAERVMSYLVNSFQTSSAVCLICISTVKKMDPIWNCDKCYAFLHMSCILHWINDSLSYKRARGITPIWACPKCRMEYDQEQIPRLYRCFCKKTVDPPHQPWAIPHSCGETCGKPLQPECGHKCVLLCHPGPCPPCAKMVSVKCYCGKLPAQPRRCNAKDWSCGTVCNKRYDSCAHSCSSLCHTDECPPCVEVTPLKCRCKSNEKVGECHEGTWVCEKPCNRRFSCNVHSCESTCHLPGDCGNCPLEKNRSCPCGKKRYEVSCRRQQVPTCGDTCGKLLDCGSHLCNMRCHADRCGQCLEVVTKACRCGSYTKEIACAKEFHCNKKCIQMRLCGRHLCNRKCCDCISKSTSNACEKTCENTLNCRKHKCAAPCHSGPCYPCTRTDVIQCRCGGSKITVPCGTRKRIKPPLCNKSCKIPPICHHSKRETHKCHHGPCPPCKKVCGLTHKRCGHTCPATCHTKVWVKSRANGIKAQPVGPWDRPKDVMELKTLPCPPCEVSVPVTCLGGHETRPWPCHMSRPSSCGRSCGRLLPCENHACESTCHKLQTPDNESNGGGAPCMECERECNFARPPGCTHACPRPCHPAPCKPCKQLVRVSCHCGISTLYRHCVNLTSATSKERDELLKCGNQCPKNYPCGHRCVNDCHSGECKGGEGCSKKVRLWCKCKRIKKDYLCSLLQKEPITVECDGVCESLRNERKEAQEAMIARKLEEEELRNREEIEKFEKKFKPRRKRKDKYDSAKQSRGSAKNRYRSAWILAIIVSIVGIIIAYLTAPDLNVPGLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01476621;
- 90% Identity
- -
- 80% Identity
- -