Basic Information

Insect: Vollenhovia emeryi
Gene Symbol: PRDM10
Assembly: GCA_000949405.1
Location: NW:759471-764776[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.00067 0.052 13.6 0.2 2 23 542 563 541 563 0.96

2 11 0.00058 0.045 13.8 0.1 2 23 575 596 574 596 0.95

3 11 0.013 0.97 9.6 3.3 1 19 613 631 613 635 0.93

4 11 0.00027 0.021 14.9 0.3 2 23 644 665 643 665 0.97

5 11 0.0032 0.25 11.5 0.3 1 23 672 694 672 694 0.98

6 11 0.00098 0.076 13.1 4.2 1 23 701 723 701 724 0.95

7 11 0.0017 0.13 12.4 4.6 1 23 729 751 729 751 0.98

8 11 2.5e-05 0.0019 18.2 5.9 1 23 757 780 757 781 0.95

9 11 0.0012 0.096 12.8 1.7 1 23 813 836 813 836 0.97

10 11 9.6e-05 0.0074 16.3 2.0 1 23 858 881 858 881 0.95

11 11 0.0028 0.22 11.7 3.4 3 23 919 940 919 940 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.00067	0.052	13.6	0.2	2	23	542	563	541	563	0.96
2	11	0.00058	0.045	13.8	0.1	2	23	575	596	574	596	0.95
3	11	0.013	0.97	9.6	3.3	1	19	613	631	613	635	0.93
4	11	0.00027	0.021	14.9	0.3	2	23	644	665	643	665	0.97
5	11	0.0032	0.25	11.5	0.3	1	23	672	694	672	694	0.98
6	11	0.00098	0.076	13.1	4.2	1	23	701	723	701	724	0.95
7	11	0.0017	0.13	12.4	4.6	1	23	729	751	729	751	0.98
8	11	2.5e-05	0.0019	18.2	5.9	1	23	757	780	757	781	0.95
9	11	0.0012	0.096	12.8	1.7	1	23	813	836	813	836	0.97
10	11	9.6e-05	0.0074	16.3	2.0	1	23	858	881	858	881	0.95
11	11	0.0028	0.22	11.7	3.4	3	23	919	940	919	940	0.98

Sequence Information

Coding Sequence: ATGGATCCAAGGGGCCCTCCTGAGGGGGCCCCTGCCGAGTCCTTCGAGATAGCCAGCATCGACAGGGCGGCTGACACCTCGGTGAACTGGCCTACGGACCATCCCTTCGCCACGTCCCTGTGCGAGCAGCCGAAGAAGCTGAACAGGCTCGTCTTCCTGACGGTGAGTGACCCTCGGCTGACGCGAGCGTCATTCACGACGCGACCGCTCTCTTGCCAGGTTGAATATGTGGAGGATCAGTCCCGGCTGTTCCCCACGTACGAGCAGATCTCCTTTTCCCCGAGGGCGACCTCCCCGCTGTCCGAGTTCGAGCATCGAGTCAGCCCGCTGGACCCGAATATGAGCTCCGCCGCCAGATACTCCCCCACGCCGGTCCAACTGCCCTCCTCGCCCTTCCACAACTCCGTCGTCGTGCTGCAGGGCCCGTCCTCGCCCCTCATGTCGCAGCCCGAGCCGAACATACGAACGAGCATCAATTACGTCACCCAGCTGGCTCATCCGATCGACACTCAGACCGTACCCCAGGCGGACGCCACCGCAGACTTTGTTGGCAATGGGAACGAGGACGGGCTGGTGTCCAGCGTCAGCAACGAACTGATTTTGATGCAGGAAACTGCGCCCGAGTTGGAATCCTCGGCGACTCCCCTGATGCTAACGGGAATACCGGGCACGGACTTCGCTCTGACCAGGGATTTCTTGGTGATGCAGGACGATCAGATAAACGTTATCAACACGTTTAAAAATCAGAACATGGAGATGGAGGACAACTCCATAGCTTTGCCACCCATTACCGAGGATGCGAACAAGGAGAACAACAATCTCGCTTTGCCAGAGGGTGATAAGGAGATTCAACAAGTTGCCAAAGACCTGCCGTCCACCGAGAAGAGGAAAGTAGTCGAGAAGAAAGATATTAGGAGATCCAAGCGTCATATAACGGATAAAAAAGATTTCTGGTGCGACGACGAGTACGACAGTAATTGTGCCAAAGACGACAGCTCTAACTTGACCGACGTATGCGCAATCGCGGATCAACCTGTACCATCGCGTGCTGTAGCAACACTGCCAGGATCATATCTTTTGTTAAACAAACTATCCACTTTGCACGCTGCAGCGAACAACGTGACCTATGGTATCTTTGCGAAACGTAATATTCGAAGGCGCACGCAATTCGGGCCCATCAAAGGCGAGTTTTGCGCCTACGACGGCTCGCCCTTCGAGGACGCTCTGCCACTGCTCTATGAAACTGAACACGGCGAATTCCTGAAAGTAGACGTTTCCAACGAAAACACTTCAAACTGGATGCGCTTCGTGCGGCCCGCGCTGACGTACAAGGAgcaaaatttgattatttgtCAGCAGAAAGATGGAATAGTGTTTTTGACCAATCGAAACATCTCGCCGAAAGAGGAGCTAAAGGCGGGCCCCGGTCCAGACTATGCGAGTCGCAGAAATTTGCCAATGCTCAAACCAGACGTGAAAGATGAAAAAGGAGAAGTGGCTAATCAAGCACCCACGTGGCCACGTTTGGACGGTAATTCTTACAATCGACGCATAAAGATGTTTCGCGACAGGAACgtgaaggagaaggagaactCGCGACAGAACAAGTGCGACAAGGAGTGGAAGTGTTCCATGTGCAGCTTGATTTTCAGAAAGCCGTCCCTGCTCAACTTGCACACGGCCGTTCATTCTAACGATATCAAAATCGAGGATGAGATGTCCACGTGCCCGCAGTGCGGACTGGAATTCCAGAAGCCGAGCGAATTGGTGAACCACGTGTCTCAGCACGGGCGAACGGCGTTACCTAAAGCGAAGAGATTAAATCCTTTGGGTTCATACAAGTGTTCAATGTGCTACAAACGTTTCGCCACCAAGATACGGTTGCAACAGCACTGTTTGGCGCATGGCGCTGAAGACCAAAAACCACTGCCGTGCAGTATCTGCTTGAAACGATTCATGAACAACTCCGCATTGTCCGGTCATCTGAAAACGCATAAAGAAAACAAACAGGTCTTCGAGTGCCCAATGTGCCGGCAGCTCTTCCGCCAGGGTACGATGCTGAAGGATCACGTCGAGACGCATAGGAATCAAGACGGTATATTCAATTGCCCTCACTGCCAGCGAACATTCATCAAGTATTCGGTCATTCGCAAACACATTCGGGCGCATCACTGCGAAAGGAAGCACAAGTGTCAGCATTGTGCGAAACGCTTCCCGACGGTCGACAAACTGCGAATGCATCTGCTGAAACACTCTGATCACagAGAATTCCACTGCGCGAACTGCGGTAAACGGTTCAAGAGGAAGGACAAGCTGAAGGAGCACATGACGAAGATACATCACTCCCAGACGGTTAACGGAGAGCAAATAACGCAGAACAGCCAAGCGAAGAAATTTGTGCCAAAGgTGAACCCGAACGACTACAATCGCTTCATTTACAAATGCCATCAATGCCTGGTGGGTTTCAAAAGAAGGGGAATGCTGGTGAATCATCTGGCGAAGCGGCATCCCGACGTCGCTCCCGAATCTGTGCCGGAATTGAACTTACCTATCCTGCGACAAACCAGAGACTACTATTGCCAGTACTGCGACAAGGTGTACAAAAGTAGCAGTAAGCGTAAAGCACATATCGTGAAGAACCATCCGGGCGCGGCCTTGCCGCCCAGTAACCGGCAAAAGGAGTCTGAGTTTTCAGGACTGCCGAATCCAAGCTTCAGTCAGACGGTGGGCAGCATCACGACCAGTCCTCAAGGTTGTCAGTGGTGCCACAAACAGTACGCCAGCAAGGCGAAGCTGTTGCAGCATCAACGCAAGAAGCACGCGCACCTGATGGAGCCGGCGGATCAAGTACCGCGATCGCGGAACCGGCCGCCGCAAAATCAAAATCAACCACCCGCGCTCAACGACAGCAACTATGTGATATCCGATTATATACAAGGATGCGACGGGGATTTCCTGAAGCAGAAAATCAAAATAACGAACGACGTTGATCTGATAGGCAACGGAGGTTTGGAGATGATCGGTCAGCAGATTGTGCGTATGCGCGACATACGTTGA
Protein Sequence: MDPRGPPEGAPAESFEIASIDRAADTSVNWPTDHPFATSLCEQPKKLNRLVFLTVSDPRLTRASFTTRPLSCQVEYVEDQSRLFPTYEQISFSPRATSPLSEFEHRVSPLDPNMSSAARYSPTPVQLPSSPFHNSVVVLQGPSSPLMSQPEPNIRTSINYVTQLAHPIDTQTVPQADATADFVGNGNEDGLVSSVSNELILMQETAPELESSATPLMLTGIPGTDFALTRDFLVMQDDQINVINTFKNQNMEMEDNSIALPPITEDANKENNNLALPEGDKEIQQVAKDLPSTEKRKVVEKKDIRRSKRHITDKKDFWCDDEYDSNCAKDDSSNLTDVCAIADQPVPSRAVATLPGSYLLLNKLSTLHAAANNVTYGIFAKRNIRRRTQFGPIKGEFCAYDGSPFEDALPLLYETEHGEFLKVDVSNENTSNWMRFVRPALTYKEQNLIICQQKDGIVFLTNRNISPKEELKAGPGPDYASRRNLPMLKPDVKDEKGEVANQAPTWPRLDGNSYNRRIKMFRDRNVKEKENSRQNKCDKEWKCSMCSLIFRKPSLLNLHTAVHSNDIKIEDEMSTCPQCGLEFQKPSELVNHVSQHGRTALPKAKRLNPLGSYKCSMCYKRFATKIRLQQHCLAHGAEDQKPLPCSICLKRFMNNSALSGHLKTHKENKQVFECPMCRQLFRQGTMLKDHVETHRNQDGIFNCPHCQRTFIKYSVIRKHIRAHHCERKHKCQHCAKRFPTVDKLRMHLLKHSDHREFHCANCGKRFKRKDKLKEHMTKIHHSQTVNGEQITQNSQAKKFVPKVNPNDYNRFIYKCHQCLVGFKRRGMLVNHLAKRHPDVAPESVPELNLPILRQTRDYYCQYCDKVYKSSSKRKAHIVKNHPGAALPPSNRQKESEFSGLPNPSFSQTVGSITTSPQGCQWCHKQYASKAKLLQHQRKKHAHLMEPADQVPRSRNRPPQNQNQPPALNDSNYVISDYIQGCDGDFLKQKIKITNDVDLIGNGGLEMIGQQIVRMRDIR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00885376;
90% Identity: iTF_01523591;
80% Identity: -