Veme009448.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- -
- Assembly
- GCA_000949405.1
- Location
- NW:3342914-3349466[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.074 5.7 7.2 3.1 1 23 389 411 389 411 0.97 2 19 0.013 0.97 9.6 0.5 2 23 448 469 447 469 0.96 3 19 1.3e-05 0.00098 19.1 1.5 1 23 536 558 536 558 0.98 4 19 0.0058 0.45 10.7 0.7 1 23 561 583 561 583 0.97 5 19 1.3e-05 0.001 19.0 0.6 2 23 633 655 632 655 0.96 6 19 0.0026 0.2 11.8 3.1 1 23 661 683 661 683 0.96 7 19 6.9e-05 0.0053 16.8 1.0 1 20 689 708 689 713 0.94 8 19 1.5e-05 0.0011 18.9 1.3 1 23 787 809 787 809 0.97 9 19 0.00036 0.028 14.5 4.1 1 23 861 883 861 883 0.96 10 19 0.00022 0.017 15.2 0.7 1 20 888 907 888 909 0.94 11 19 0.037 2.9 8.2 0.3 2 23 920 941 920 941 0.97 12 19 1e-05 0.00078 19.4 0.7 2 23 980 1001 979 1001 0.97 13 19 2.1e-05 0.0016 18.4 1.6 1 23 1006 1028 1006 1028 0.95 14 19 0.00088 0.068 13.3 1.7 1 20 1034 1053 1034 1056 0.93 15 19 3.6e-06 0.00028 20.8 0.4 1 23 1072 1094 1072 1094 0.95 16 19 4e-07 3.1e-05 23.8 0.6 1 23 1100 1122 1100 1122 0.98 17 19 3.2e-05 0.0025 17.8 0.2 1 23 1128 1150 1128 1150 0.97 18 19 0.019 1.5 9.1 6.9 1 23 1156 1178 1156 1178 0.96 19 19 0.004 0.31 11.2 0.6 1 20 1184 1203 1184 1205 0.90
Sequence Information
- Coding Sequence
- ATGGACGCCGTGGAGATAAATACGTCGGGTCCGCCGCAGGGCGAGGACGCGGTCGCGTCCGACATCAAGATATGCCGCGTCTGCCTGCTGGGCAACCTGATGATGCGCGACCTCTTCGCGGAGAGCGAGGTCGCGTCCCTGTCGGCGAAGGCGATGAGCTTCGCCAACGTTAAGATGTTACCAGGCGACGGTCTACCGGGGCAGGTGTGCTGCATGTGCGCCGACAAGCTGGAGTCGGCGTACGAATTTAAGTTGCAAGTGGAGCAAGCCGACAATGTCCTCCGAGAGAAGCTCGTCGGTGGAATAATAAAGGAGGAATTGTTTCTTAATGAAGTCGAGATACACCTGGACGCCGACAGAAGCGACGGGATAGACGAGATTAGTGTCAACGCCGATTACGAATCCGCGGCGACGGTGTTGCCGGTGGAGTCGGCAGCTGACAAGAACTTTCTGAAGGGTCAGTTGCTGCTTTTCGAAACTGAAAAGCTGACGGAGACAGACGGGATGCAACAAGATTCAGAGCACGATAACACACAGGAAATGACGCAGGAAAGCATCATGGAAAAACTACAGCAAGAATTGGAAGGCGCGACAGACACAGATATGTCGGACACCATCGATGAGTCTAGGGATGAGGAACCTCCCAACGACGAGAGTGTCATTCGAAGTTGCACAGAGGCGATTCCAACGGAGGAACACGATTACATTATGCAGCAACAATGTATATTGCCGGCTGAGCAGCTTTCCTTGCAGGAGGAAATGCAGGAAAATGTACCGGACACATTCAAACAAGATACAATTGAGTGCCAAGAGACACTGTCCGAACAAAACCAAGAGATTCAGGCTGAACAAGATCAAGATGCTGAGCAACACCAAGAGAATAATGTTACGATGAAGCAAGACGTTCAGGCCGTTTGGGAGAATCAAGTTGAACAGAGTCAAAGTGACACGGAGCTATTGTGCCAGGAAGAGGCACTTAAAGCTGACGCTAATGAGTCAGTAGCGGAACAGGAATCGTCCCAGAATGAAACTAGAAGGAGCAAACGTAGATTGGCTCGTCGAGTGTTCGCCGAGCGAGATTCCGACGAGGagaattatttcgaaaatctGAATCTCAGTTCTCGACTGAAAAAAGCGCAGGCGGATAAGACGGAGAAGATCTTTTTCATGTGTTACTTATGTGATAAGCAATTCCTTTCGAAGAACGTCCTGAAAGAGCATATGCATTCCCATGAAGAAGTGAGGAAAACGCTATCTCTGAAGAAAACGCCGGAGAAGCCGCAGAAGGTGCAGACCAGCGTTTCCGTCACGAAGACGCCGCCATCCGGGAAGAAAGCTAACAAGTGCCCTTATTGTGGTAAAGAGTATCTGTACATAATCTCGTTTACTAAACACATTAAGCAACACGAGCGAGAGCGGGAGGAAGGAAAGGAGGATCCGATGCCGCTCGAAATATCGTTCCACGAGGATGAGCACAGTCTAGACTTCGATAACGGCAACAAGTCGGACGGCGAGTGTAAGAAGCGAAAGAGGGGAAGTGCAGCCGACGACGTTGCGAGCGACAGCGATCAGGATAAGAGGAGAAAGCGTAGTCACGTTGAAGAATTCACGTGTGACAAATGTCCGGAAACATTCGACACGAAGCGCAGCCTGCAAAAGCACTCGATCACGCATATTAGCTTCATATGCAGCGTGTGCGAAAACAAGTACGACACCTTGGAACAACTGAGGAACCATCGAACGATGCACGTGGTCGAGGGCGTGCTGACCGAGCAGGACTTGGAAGAGGACATGAAGCGGATGGCGACCAAGAGCGAGAAGAACGAGACTGAGGACAACAGGAACGTCGAGAATGAGGGGGACGACGGCAAACCCGCGGAAAGCACGAAGGAACTGAAATGCCCGACGTGTTCGATGACGTTCGCGCGCAAGAAGGCGCTCTCCAGACACATAGAGACGATGCACTCCAGCGCCCGCTCTTACGAGTGCAAGATATGTTGTCAACAATTCACACGGAAGGATCTCCTGCGCAGACATGCCGAGCAGCACGCACGGGTCAAGACCTACAAGTGTACCCAGTGCAATAAGACCTTCAGTAACGAGCTCACGCTGAGAAATCACCTGGTTGCCACGAATCACAAGACGTTCGTACACGGGCAGGAGTACGATCCAAACAAGCGTATAAAGCGCGTGGCGGCGAGAGCGGCGCAGAAGATTATCGATAAGATCAAGACGGAGGACGGTCTTGAGGATTACGACGACGATAACGACGACAATACCGATTACGACGCCAAGTTGGACGGGCATTATCGCCGTAAGCGCGACGTTACACCAAAGAAGTACAGTTATAAGAAAGAATTCGAGTGCGCGACCTGTAACAAGAGGTACAGCTCGAAGCAAGCGTTGACGAAGCACATGGAGCAGCATGTCAAGGAGGAGAAAGCGGAGAAGGCGGCGGAGAAGCTGAAGAAGGCCGCTTTGGAGAAGAAGGAGACGCAGAAGGCGAGCAACGTGGAGGATAACGATTACGACGATAACGACTCCGACTTCGAGAGCGGCCTCGACTGGCCGATGGACAGCCACGAGTGCGTCACGTGCAAGAAACGATACAGTACGAAGAAGTCGCTGCTGCGCCACCAGCTGCTGCACGAGGAGCCCAACTTCGAGTGCGATATCTGCAACGTCAAGTTCTACCGCAAGGACAAGCTGAAGGCGCACTACGACAAGTGTTCGGAGAAGAATCCCGACCAGGTGAGGAAGTGCAACATCTGCGGCGACAGTTTCGAGAACAATGAGATCCTCCGCGAGCACAGGGCCAAGCACGTCACCGAGGGTATCTTAACGGAGGAGGATCTGCGGGACATCGAGCCGAAATCcgaagaaaagaaaccggGCGAGAAGATCGGCCGGAAGAGGAGGACCGACATCGTGGGGCTCGAGTGTACCGAATGCAACAAGCGGTATACCTCCAGGAAGGGTCTACTGCGGCACATTCAGGTGCACGAGGGCAAGAAGTACCTGTGCGACATATGCCCGAAGAAGTTCTACCGGCGGGAGCACCTCAAGATCCACGTGGCCAAGCACAACATGGTCAAGCCGTACAAATGCACCCGCTGTACCAAGCGCTTCATCAAGGAGGAGCAGCTCAACAATCATTTGCCTAAGCACGATCGCACGTTCAAGAAAAGTAAAGAGACCGACAGCTCCAAGAGATTCCTCTGCGAGATCTGCAGCAAGAGCTTCACGCAGTCGACGACGCTGATAGCGCATCTGCGCGCCCACAACGGCATCAAGCCGTTCGTGTGCGAGGTATGCTCCCGGCCGTTCACCACCAACGCCTACTTGAAGATGCATatgcgcacgcacacgcaggAACGCCCGTACATCTGCCAGTACTGCTCGCGAGCGTTCGCACGTGCCGACACCCTTGCGAATCATCTGACGTCGCACACCGGCGAAGCCAAGTATCACTGCAAGTGCTGTCCGAAGAACTTCCGACGATTGAAGTCGCTCAAGGAGCACATGTTCATTCATACGGGGCAACGGCCTTACGAGTGTCCGACCTGCGACAGGAAGTTCAACAACAATGGTAGCCGCTATGCGCACAGCAAGCGCTGCAAGCAGAATCTTTTGCAGAATCAGAACCGGGCGCAGCAGATGATCCAGCAGacgcaacagcagcagcagcagcagcaacagcatcAACCGCAGCCACAACCGCAGCAGGTGCAGATACAGGTGCAGCAGCAGCCGCATCCGGTCAGGCTGCATCACGCCACGATCGGCCAGGCGCAAGTAGTCAAGGCGCAGAACATCAAAACGATTGCTATAACGAGACCGGCCGAACCTGGCACGACGCAACAAGTTATGCAGCATCAGGAGATATTAATGCCTCTAATCCTACCGCTTACCGTCACTCTCGCCGATGTAGGCGAGGAGGTGATACTACCAGAGGGTACGAAGATATTCACGACGTCTTAA
- Protein Sequence
- MDAVEINTSGPPQGEDAVASDIKICRVCLLGNLMMRDLFAESEVASLSAKAMSFANVKMLPGDGLPGQVCCMCADKLESAYEFKLQVEQADNVLREKLVGGIIKEELFLNEVEIHLDADRSDGIDEISVNADYESAATVLPVESAADKNFLKGQLLLFETEKLTETDGMQQDSEHDNTQEMTQESIMEKLQQELEGATDTDMSDTIDESRDEEPPNDESVIRSCTEAIPTEEHDYIMQQQCILPAEQLSLQEEMQENVPDTFKQDTIECQETLSEQNQEIQAEQDQDAEQHQENNVTMKQDVQAVWENQVEQSQSDTELLCQEEALKADANESVAEQESSQNETRRSKRRLARRVFAERDSDEENYFENLNLSSRLKKAQADKTEKIFFMCYLCDKQFLSKNVLKEHMHSHEEVRKTLSLKKTPEKPQKVQTSVSVTKTPPSGKKANKCPYCGKEYLYIISFTKHIKQHEREREEGKEDPMPLEISFHEDEHSLDFDNGNKSDGECKKRKRGSAADDVASDSDQDKRRKRSHVEEFTCDKCPETFDTKRSLQKHSITHISFICSVCENKYDTLEQLRNHRTMHVVEGVLTEQDLEEDMKRMATKSEKNETEDNRNVENEGDDGKPAESTKELKCPTCSMTFARKKALSRHIETMHSSARSYECKICCQQFTRKDLLRRHAEQHARVKTYKCTQCNKTFSNELTLRNHLVATNHKTFVHGQEYDPNKRIKRVAARAAQKIIDKIKTEDGLEDYDDDNDDNTDYDAKLDGHYRRKRDVTPKKYSYKKEFECATCNKRYSSKQALTKHMEQHVKEEKAEKAAEKLKKAALEKKETQKASNVEDNDYDDNDSDFESGLDWPMDSHECVTCKKRYSTKKSLLRHQLLHEEPNFECDICNVKFYRKDKLKAHYDKCSEKNPDQVRKCNICGDSFENNEILREHRAKHVTEGILTEEDLRDIEPKSEEKKPGEKIGRKRRTDIVGLECTECNKRYTSRKGLLRHIQVHEGKKYLCDICPKKFYRREHLKIHVAKHNMVKPYKCTRCTKRFIKEEQLNNHLPKHDRTFKKSKETDSSKRFLCEICSKSFTQSTTLIAHLRAHNGIKPFVCEVCSRPFTTNAYLKMHMRTHTQERPYICQYCSRAFARADTLANHLTSHTGEAKYHCKCCPKNFRRLKSLKEHMFIHTGQRPYECPTCDRKFNNNGSRYAHSKRCKQNLLQNQNRAQQMIQQTQQQQQQQQQHQPQPQPQQVQIQVQQQPHPVRLHHATIGQAQVVKAQNIKTIAITRPAEPGTTQQVMQHQEILMPLILPLTVTLADVGEEVILPEGTKIFTTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00126152;
- 90% Identity
- -
- 80% Identity
- -