Veme004489.1
Basic Information
- Insect
- Vollenhovia emeryi
- Gene Symbol
- bab1
- Assembly
- GCA_000949405.1
- Location
- NW:320381-624245[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.8e-17 2.1e-14 52.6 0.0 1 43 374 417 374 419 0.95 2 2 9.4 7e+03 -3.6 0.9 7 15 500 508 499 509 0.87
Sequence Information
- Coding Sequence
- ATGACGCAACAAAGCGGCGCTGGGTCACCCCAGCAGTTCTGCCTGCGCTGGAACAATTATCAGACTAATCTGACCAACGTCTTCGATCAGCTACTACAGAGCGAGAGCTTCGTGGACGTGACCCTGGCCTGCGACGGGCACAGCGTCAAGGCCCACAAGATGGTCCTGTCGGCCTGCAGCCCGTACTTCCAGGCGCTCTTCTTCGACAACCCCTGCCAGCATCCGATCGTTATCATGAAGGATATCAAATGGCCGGAGCTCAAGGCCGCGGTTGAGTTCATGTACAAGGGCGAGATCAACGTCTCCCAGGAGCAGATCGGCCCGTTGCTTAAGGTCGCGGAGAGCCTCAAGATCCGCGGCCTCGCGGACGTTAACAGCGAGCACGAGCTGACGTCCAGGCCGACCCTGGAGGAGGTCGCGACCGCGGCGATGCAGCGGAAGAAGCGCCGCCGGATGTCCGGCGAACGCTCGCCGTCCGCCAACAGTCCGGAACGCGTCGGCTCCGGCAGCATCGGCCCCGACGATCAGGATGTCATCGGCAGCAACATCATCGTGCCCGAGATTCACAGCATGGTGCCGTCGACTGCCAGCTCGACCCCGAGGTCCCTCGGCTCGCCCAGCACGCCCAGCATCTCCGTCACGCCGCAGATCAACCTGCAGGAACTTCCGACCTCGCTGCCCTTACCGCCACCcccgccaccaccaccgcaGGGACAGCAGAGCTCGCACCCCCTGCCGACCCACCACGTGCCCGGCCACGTGACTTCCGGTCCGCACGCGCCCGTCAACCACCTGGGCGGCCACGGCCAACAACTCAGCgtgcagcagcaacagcagcagcagcaacagcagcagcaacagcatcATCAGCAGGGCGCCGGCAATCAGCCCAACGCCGGTGACGACCTCGAGATCAAGCCCGGCATCGCGGAGATGATTCGGGAGGAGGAAAGGGCCAAGTTGTTGGAGTCGTCCCACGCTTGGCTCGGTGCCTCCACCTCCAGTATAGCAGACAGCTACCAGTACCAGCTGCAGTCCATGTGGCAGAAGTGCTGGAACACCAACCAGAGCCTGGTGCACAATCTGCGCTTCCGGGAACGTGGACCCCTCAAGTCCTGGCGGCCGGAGACCATGGCGGAGGCGATCTTCAGCGTGCTGAAGGAAGGACTCTCCCTCAGCCAAGCGGCAAGGAAATACGATATCCCCTACCCGACGTTCGTCCTGTACGCGAACCGAGTGCACAACATGCTGGGTCCTAGCGCCGACGGCGGGGCCGGTGAGTATCTGCGCCCGAAGGGACGAGGACGACCGCAGAGGATCCTGCTGGGTGTCTGGCCCGACGAGCATATCCGCGGGGTGATTCGAGCAGTGGTATTCCGCGACGGACACTCGCCCCACATCGTCAAGGAGGAGCCGACCACGATGTACCCCAGCCTGGCGAACTACACGGCCTGCAACGGCCCGGAAGGCGCGGTCAGTCCGAACGCGGCAACCGTAGCTGCGGTCGCGGCGGTCGCTCAAGGTCTGCGACACCAGATGTGCAACATGGTGGCAGCGGCGCACTCGCAGCAGCACGACATGATGGCGACGAACCTGTCGACGAACCTGTCCACCAGCCTGGCGTCGAATCTGCAGGCGGCGATGCAGGCCAGCCAGCATCATAACAACAACAACACGAGCAGCAacgcgagcggcggcggcggcggcctcGGCAGTAGCAACAGCGCCGGCAACAACAACGGCAACTCCCCGTTGAATCTCGGCCTGGCGAGTCCAGGCTCGGGCGGGCCGCCCGAGAGCCCGTTGGAGAGTCCCCTGGCGAGCCCGCTGGGCCCGCTGATGGACCCGGCGGGCCACATACCCAGCAGCGTGGAGGTCGGCATCGGCGTGAGCGGCATGACATACAAGCCGGCGCGGAGCTTCGTCAGTCCGCGCCCGGAGAATCTCTTCCAGGAGGATATCGCCGATCTGGTGAAGAGCCCCCACGGTCTCAAGGACAAGGACAAGATCCCGGTGAAGCTCGAGCCGCTCACGGACTCGCGCTGCGAATAG
- Protein Sequence
- MTQQSGAGSPQQFCLRWNNYQTNLTNVFDQLLQSESFVDVTLACDGHSVKAHKMVLSACSPYFQALFFDNPCQHPIVIMKDIKWPELKAAVEFMYKGEINVSQEQIGPLLKVAESLKIRGLADVNSEHELTSRPTLEEVATAAMQRKKRRRMSGERSPSANSPERVGSGSIGPDDQDVIGSNIIVPEIHSMVPSTASSTPRSLGSPSTPSISVTPQINLQELPTSLPLPPPPPPPPQGQQSSHPLPTHHVPGHVTSGPHAPVNHLGGHGQQLSVQQQQQQQQQQQQQHHQQGAGNQPNAGDDLEIKPGIAEMIREEERAKLLESSHAWLGASTSSIADSYQYQLQSMWQKCWNTNQSLVHNLRFRERGPLKSWRPETMAEAIFSVLKEGLSLSQAARKYDIPYPTFVLYANRVHNMLGPSADGGAGEYLRPKGRGRPQRILLGVWPDEHIRGVIRAVVFRDGHSPHIVKEEPTTMYPSLANYTACNGPEGAVSPNAATVAAVAAVAQGLRHQMCNMVAAAHSQQHDMMATNLSTNLSTSLASNLQAAMQASQHHNNNNTSSNASGGGGGLGSSNSAGNNNGNSPLNLGLASPGSGGPPESPLESPLASPLGPLMDPAGHIPSSVEVGIGVSGMTYKPARSFVSPRPENLFQEDIADLVKSPHGLKDKDKIPVKLEPLTDSRCE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141751;
- 90% Identity
- iTF_00898877;
- 80% Identity
- iTF_01520377;