Vcin037691.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Villa cingulata
Gene Symbol
-
Assembly
GCA_951394055.1
Location
OX596025.1:9584962-9587233[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.00061 0.075 14.7 0.1 3 20 176 193 174 195 0.92
2 16 3.9e-07 4.8e-05 24.8 2.2 2 23 271 292 270 292 0.97
3 16 0.88 1.1e+02 4.8 6.3 1 22 297 318 297 319 0.82
4 16 4.9e-05 0.0061 18.1 1.2 1 23 324 346 324 346 0.97
5 16 1.9e-05 0.0023 19.5 0.4 2 23 350 371 349 371 0.97
6 16 0.24 29 6.6 6.5 1 23 376 398 376 398 0.87
7 16 7.7e-06 0.00096 20.7 1.1 1 20 404 423 404 424 0.97
8 16 7.9e-05 0.0098 17.5 1.4 3 23 434 454 432 454 0.95
9 16 2.5e-05 0.0031 19.1 1.6 1 23 462 484 462 484 0.98
10 16 3.2e-07 3.9e-05 25.0 0.1 1 23 489 511 489 511 0.98
11 16 0.0004 0.05 15.3 2.0 1 23 531 553 531 553 0.96
12 16 1.2e-06 0.00015 23.2 2.7 1 23 561 583 561 583 0.98
13 16 6.5e-05 0.008 17.8 0.1 1 23 588 610 588 610 0.98
14 16 7.9e-06 0.00097 20.7 0.2 1 23 623 645 623 645 0.96
15 16 1.1e-06 0.00014 23.3 2.3 1 23 653 675 653 675 0.98
16 16 2.3e-07 2.8e-05 25.5 0.5 1 23 680 702 680 702 0.98

Sequence Information

Coding Sequence
ATGAAACATCATTGGAGTAATATGAAATGGAATATAGAAAACTTCGATTATGACAACGATCCATTCCAAAAtataaaagcagaaaaaaataatacgatTGTGAATTATACCAATAGAGAGGAAAGTATTCGTTGTACTGACAAAATCATCAGCTCATATCAACATGTACACAAAGTAAACGATAAACAAAACATGGACAAAAATCCCGAATTTCTAGTTCATATAAACAATGATGATGATAGCAAAAATATACCAGAATGTGTTACGGAAAATACAAATCTAAATATAGACACAAATACAAATGATGGATCGTTTCAATTCGAGTcagatatttcatttttatctggTGATAATGATGATCATTCAGAAGCACAAACCACAAAAAAGAACATTGAAAATGGTTCAacgaaattaaataatgaaatttgtgATGAAAATGTATGTTcagaagaaaaaattcaaaatcattatTTGGTTGATCATTGTGAAACCAATTTTGTGTCGTCAACTAATCCGAATATTATATGTGATATTTGTAATGCAAGTTTTTCAACTAAAGAAAATTTCGAAACTCATTTTTCGATATGTGCTAAAACTGAAAAAGGAGAAATCAAAATGAGTATAATAGCGCAATCAAATGATGTGAACAATAAAACCAATGTGAACGACCAGGATCTTGAGAAGAGTTGTGAAGGAAATGTATTTGCAGAATCACTTGATTTAAATCCATGTGTATGTAGATTTTGTTATCAACAGTTTCAAACACCCTTGAAGAGAAGAAAACATGAGCTAATTCACACCGGCGAACTTACATGTAAAATTTGTGATAAGTCGTATCCAACTAAACGTTATCTAAACAGGCATATGAAAAGACACGGACCAAAATCATTTAAATGTGATTATTGCCACAAGGAGTTCTTTAcattaagtgaaaaaaaatgtcATGTTGAAAATCATCTTGCAAAAAAGTTTCCATGTGAAATTTGTAGTAAAACATTTCGCAGCAAACGAATGTTAAGTATTCATAATAGTAcgcataaaataataaaatgtaaaatttgtgGTGTAATTCTTCGCAATGAGGAAAGTTTAAGAAGGCATATGAAAAGACACGGTGATAAAGAATACAAATGTGATTACTGTGACAAGAAATTCTTTACATCAACTGAAAAAAAATGTCATGAAAGTACTCATACTGGAGAAAAACCATACGAATGTAATCATTGTCCAAAAAGATTCAGAAAGAAAGAAGCATTAACGAAGCACTTAGTATGTCATAACAATAAAAGAGAACACTTATGTTCTGAATGTGGTTTTGCTTTTACTATTCGTGCAAATTTAAAACgtcatttaaaattacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaatataaaatcatatttggTAAATCACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTGGCAGGGTCTTTACAAATCCTTTTGGATTGGTTCAGCATATAAGAATACATAAACgagaacaacaaaataaatcaatattgaAAGACTCAAGTACCAACGAAAGAGAATACTTATGTCCGGAATGTGGTTTTGCATTTACTCATTATCCAAATATGTTACATCATTTGAAactacataaaattgaaaaaccaACTAGTTATGACTGcagtatatgtaaaaaaaaatacaataaaaaatcaaatttggtAAATCACATGAAAACGCATTCAAATACAGACTACTCGTGTACGGAATGTAGCAGGGTCCTTACAAATCCTGTTGGATTGGCTCAgcatatgaaaatacataaacgAGAACAACAATATAAATCCAACGAAAGAGAATACTTATGTCCAGAATGTGGTTTTGCATTTACTGATTATTCAAATATGGTACGTCATTTGAAactacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaataaaaaatcaaatttggtAAATCACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTGGCAGGGTCTTTACAAATCCTGTTGGATTGGCTCACCATATGAATAAACATAAACGAGAACAACAAAATTAA
Protein Sequence
MKHHWSNMKWNIENFDYDNDPFQNIKAEKNNTIVNYTNREESIRCTDKIISSYQHVHKVNDKQNMDKNPEFLVHINNDDDSKNIPECVTENTNLNIDTNTNDGSFQFESDISFLSGDNDDHSEAQTTKKNIENGSTKLNNEICDENVCSEEKIQNHYLVDHCETNFVSSTNPNIICDICNASFSTKENFETHFSICAKTEKGEIKMSIIAQSNDVNNKTNVNDQDLEKSCEGNVFAESLDLNPCVCRFCYQQFQTPLKRRKHELIHTGELTCKICDKSYPTKRYLNRHMKRHGPKSFKCDYCHKEFFTLSEKKCHVENHLAKKFPCEICSKTFRSKRMLSIHNSTHKIIKCKICGVILRNEESLRRHMKRHGDKEYKCDYCDKKFFTSTEKKCHESTHTGEKPYECNHCPKRFRKKEALTKHLVCHNNKREHLCSECGFAFTIRANLKRHLKLHKIEKPTSYDCSICQKKYNIKSYLVNHMKTHSNTEYSCTECGRVFTNPFGLVQHIRIHKREQQNKSILKDSSTNEREYLCPECGFAFTHYPNMLHHLKLHKIEKPTSYDCSICKKKYNKKSNLVNHMKTHSNTDYSCTECSRVLTNPVGLAQHMKIHKREQQYKSNEREYLCPECGFAFTDYSNMVRHLKLHKIEKPTSYDCSICQKKYNKKSNLVNHMKTHSNTEYSCTECGRVFTNPVGLAHHMNKHKREQQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01519581;
90% Identity
iTF_01519571;
80% Identity
-