Basic Information

Insect: Villa cingulata
Gene Symbol: -
Assembly: GCA_951394055.1
Location: OX596025.1:9498691-9500770[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.00054 0.067 14.9 0.1 3 20 112 129 110 131 0.92

2 16 3.5e-07 4.3e-05 24.9 2.2 2 23 207 228 206 228 0.97

3 16 0.79 98 4.9 6.3 1 22 233 254 233 255 0.82

4 16 4.4e-05 0.0055 18.3 1.2 1 23 260 282 260 282 0.97

5 16 1.7e-05 0.0021 19.6 0.4 2 23 286 307 285 307 0.97

6 16 0.21 26 6.7 6.5 1 23 312 334 312 334 0.87

7 16 1.1e-05 0.0014 20.1 0.9 1 20 340 359 340 360 0.97

8 16 2e-05 0.0024 19.4 1.4 3 23 370 390 368 390 0.95

9 16 5.5e-06 0.00069 21.1 3.1 1 23 398 420 398 420 0.98

10 16 3.3e-06 0.00041 21.8 0.2 1 23 425 447 425 447 0.99

11 16 7e-06 0.00087 20.8 0.2 1 23 467 489 467 489 0.96

12 16 4.7e-06 0.00059 21.4 2.6 1 23 497 519 497 519 0.98

13 16 5.8e-05 0.0072 17.9 0.1 1 23 524 546 524 546 0.98

14 16 7e-06 0.00087 20.8 0.2 1 23 559 581 559 581 0.96

15 16 4.7e-06 0.00059 21.4 2.6 1 23 589 611 589 611 0.98

16 16 1.9e-06 0.00024 22.6 0.8 1 23 616 638 616 638 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.00054	0.067	14.9	0.1	3	20	112	129	110	131	0.92
2	16	3.5e-07	4.3e-05	24.9	2.2	2	23	207	228	206	228	0.97
3	16	0.79	98	4.9	6.3	1	22	233	254	233	255	0.82
4	16	4.4e-05	0.0055	18.3	1.2	1	23	260	282	260	282	0.97
5	16	1.7e-05	0.0021	19.6	0.4	2	23	286	307	285	307	0.97
6	16	0.21	26	6.7	6.5	1	23	312	334	312	334	0.87
7	16	1.1e-05	0.0014	20.1	0.9	1	20	340	359	340	360	0.97
8	16	2e-05	0.0024	19.4	1.4	3	23	370	390	368	390	0.95
9	16	5.5e-06	0.00069	21.1	3.1	1	23	398	420	398	420	0.98
10	16	3.3e-06	0.00041	21.8	0.2	1	23	425	447	425	447	0.99
11	16	7e-06	0.00087	20.8	0.2	1	23	467	489	467	489	0.96
12	16	4.7e-06	0.00059	21.4	2.6	1	23	497	519	497	519	0.98
13	16	5.8e-05	0.0072	17.9	0.1	1	23	524	546	524	546	0.98
14	16	7e-06	0.00087	20.8	0.2	1	23	559	581	559	581	0.96
15	16	4.7e-06	0.00059	21.4	2.6	1	23	589	611	589	611	0.98
16	16	1.9e-06	0.00024	22.6	0.8	1	23	616	638	616	638	0.98

Sequence Information

Coding Sequence: ATGGACAAAAATCCCGAATTTCTAGTTCATATAAACAATGATGATGATAGCAAAAATATACCAGAATGTGTTACGGAAAATACAAATCTAAATATAGACACAAATACAAATGATGGATCGTTTCAATTCGAGTcagatatttcatttttatctggTGATAATGATGATCATTCAGAAGCACAAACCACAAAAAAGAACATTGAAAATGGTTCAacgaaattaaataatgaaatttgtgATGAAAATGTATGTTcagaagaaaaaattcaaaatcattatTTGGTTGATCATTGTGAAACCAATTTTGTGTCGTCAACTAATCCGAATATTATATGTGATATTTGTAATGCAAGTTTTTCAACTAAAGAAAATTTCGAAACTCATTTTTCGATATGTGCTAAAACTGAAAAAGAAGAAATCAAAATGAGTATAATAGCGCAATCAAATGATGCGAACAATAAAACAAATGTGAACGACCAGGATCTTGAGAAGAGTTGTGAAGGAAATGTATTTGCAGAATCACTTGATTTAAATCCATGTGTATGTAGATTTTGTTATCAACAGTTTCAAACACCCTTGAAGAGAAGAAAACATGAGCTAATTCACACCGGCGAACTTACATGTAAAATTTGTGATAAGTCGTATCCAACTAAACGTTATCTAAACAGGCATATGAAAAGACACGGACCAAAATCATTTAAATGTGATTATTGCCACAAGGAGTTCTTTAcattaagtgaaaaaaaatgtcATGTTGAAAATCATCTTGCAAAAAAGTTTCCATGTGAAATTTGTAGTAAAACATTTCGCAGCAAACGAATGTTAAGTATTCATAATAGTAcgcataaaataataaaatgtaaaatttgtgGTGTAATTCTTCGCAATGAGGAAAGTTTAAGAAGGCATATGAAAAGACACGGTGATAAAGAATACAAATGTGATTACTGTGACAAGAAATTCTTTACATCAACTGAAAAAAAATGTCATGAAAGTACTCATACTGGAGAAAAACCATACGAATGTAATCATTGTCCAAAAAGATTCAGAAAGAAAGAAGCATTAACGAATCACTTAGTATGTCATAACAATAAAAGAGAACACTTATGTTCTGAATGTGGTTTTGCTTTTACTGTTCGTGCAAATTTAAAACgtcatttaaaattacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaatagaaaaacaaattttgtaaatcACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTGGTAAAGTTTTTACATATCCTCTTGGATGGGCTCAGCATATGAAAACACATAAACgagaacaacaaaataaatcaatattgaAAGACTCAAGTACCAACGAAAGAAAATACTTATGTCCAGAATGTGGTTTTGCATTTACTGATTATTCAAATATGGTACGTCATTTGAAactacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaataaaaaatcatatttgGTAAATCACATGAAAACGCATTCAAATACAGACTACTCGTGTACGGAATGTAGCAGGGTCCTTACAAATCCTGTTGGATTGGCTCAgcatatgaaaatacataaacgAGAACAACAATATAAATCCAACGAAAGAGAATACTTATGTCCGGAATGTGGTTTTGCATTTACTGATTATTCAAATATGGTACGTCATTTGAAactacataaaattgaaaaaccaACTAGTTATGACTGCAGTATAtgtcaaaaaaaatacaataaaaaatcatatttgGTAAATCACATGAAAACGCATTCAAATACAGAATACTCGTGTACGGAATGTAGCAGGGTCTTTACAAATCCTGTTGGATTGGCTCACCATATGAATAAACATAAACGAGAACAACAAAATTAA
Protein Sequence: MDKNPEFLVHINNDDDSKNIPECVTENTNLNIDTNTNDGSFQFESDISFLSGDNDDHSEAQTTKKNIENGSTKLNNEICDENVCSEEKIQNHYLVDHCETNFVSSTNPNIICDICNASFSTKENFETHFSICAKTEKEEIKMSIIAQSNDANNKTNVNDQDLEKSCEGNVFAESLDLNPCVCRFCYQQFQTPLKRRKHELIHTGELTCKICDKSYPTKRYLNRHMKRHGPKSFKCDYCHKEFFTLSEKKCHVENHLAKKFPCEICSKTFRSKRMLSIHNSTHKIIKCKICGVILRNEESLRRHMKRHGDKEYKCDYCDKKFFTSTEKKCHESTHTGEKPYECNHCPKRFRKKEALTNHLVCHNNKREHLCSECGFAFTVRANLKRHLKLHKIEKPTSYDCSICQKKYNRKTNFVNHMKTHSNTEYSCTECGKVFTYPLGWAQHMKTHKREQQNKSILKDSSTNERKYLCPECGFAFTDYSNMVRHLKLHKIEKPTSYDCSICQKKYNKKSYLVNHMKTHSNTDYSCTECSRVLTNPVGLAQHMKIHKREQQYKSNEREYLCPECGFAFTDYSNMVRHLKLHKIEKPTSYDCSICQKKYNKKSYLVNHMKTHSNTEYSCTECSRVFTNPVGLAHHMNKHKREQQN

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01519581;
90% Identity: iTF_01519572; iTF_01519576;
80% Identity: -