Vcin030172.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- Hr39
- Assembly
- GCA_951394055.1
- Location
- OX596022.1:25898403-25901363[-]
Transcription Factor Domain
- TF Family
- SF-like
- Domain
- zf-C4|SF-like
- PFAM
- AnimalTFDB
- TF Group
- Zinc-Coordinating Group
- Description
- The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 5 0.1 1.5e+03 -0.5 4.5 78 161 25 111 2 163 0.61 2 5 0.49 7e+03 -2.7 3.0 61 102 277 300 176 397 0.58 3 5 1.1e-09 1.5e-05 25.8 0.0 1 31 467 497 467 514 0.87 4 5 0.0012 17 5.9 0.0 81 133 526 575 498 588 0.79 5 5 9.9e-78 1.4e-73 249.9 0.2 200 408 592 793 580 793 0.96
Sequence Information
- Coding Sequence
- atgtcatCCAGTAGCATCGGAGATACACCATCGTCTACTTTAAATTTGTCGAATGCAATAACATCAACAACAATGACCAGTAACCAACAAAATACAATTTCTATGTTAGGTGTGAATGCTGTTACAACATCAAATAATAACCCACCGAACATACAGCAATTAGCATCACGAAATAATATATCggttacaaatataaaatgcGAAGATATTGTTCGTCCACCATCTGCACCTGTCATTCCATCTAgtttaacaacaacaatatcaaCTCCAATAGTAACGGcaacatcatcttcatcattatcatcatcatctttattaACATCATCTGGAAGTACTGGTAACTTTTTTAATGGTGGAATACGAATTTCAGTTCCAAAAGTTGATGATTCAGATGAATCAGAATCAGAATTATCGaatattgaaaatacaaaaGTTAATCGTAGATCGAATACCACTTCTGGTAAAAATGGACCACGTCCCATGTCATGGGAAGGTGAATTATCTGAGACTGAAGATCTTATGGATACAGAAAATTCGATTAGTAATGATAAACAATTCGATGATACACAAATGTCAacaaataataaagataatacTCGACAATGTGATATTGTTGTAGCAAAATCAGAATACGATCAAATTTCTGTTGAAACTGGATCTGTAATATATTCATCTGGATCAAAAAAGTTTCAGACagatttaatgaatttaaagtATGAGCCTGGATTATCGGATGCGACTGGAAGTGGTCTTAATTCTCCATTATTAGTTAGATCAAAAACGAATCTATTACCTGCAAATCCGAGTCCAGATTCTGCCATTCATTCCGTCTATACGCATAGTTCACCGAGTCAGTCACCATTAACATCACGTCATGCACCATACACTCCATCACTCAGTCGAAATAATAGCGATGCATCTCATAGTAGTTGCTATTCTTACAGTTCAGAATTTAGTCCGACTCATTCACCTATACAAGGACGACACAATATTTATGGTAATTTTAATGGATCACTTCATCATTCCGTCTTGTATCGACCGATTGTTGATGGTTCCTGTACAGAAACTTCTCAAtcacaacagcagcaacaaacGCAGCTACAACAGCAACGGAGACCCGATGAAATTTTAACTGAAAATGATGCAATACCATCACCAGGAATATCTCGTCAACAGCTAATCAATAGCCCGTGTCCGATttgtggtgataaaatttctggCTTTCATTATGGAATATTTTCGTGTGAATCTTGTAAGGGTTTTTTTAAACGAACTGTTCAAAATCGTAAAAACTACGTATGTGTACGTGGCGGGCCATGTCCTGTAACGATATCGACACGTAAAAAATGTCCAGCATGTCGTTTCGAAAAGTGCCTACAAAAAGGAATGAAATTAGAAGCAATACGTGAAGATCGTACTAGAGGTGGTCGATCGACATATCAATGCTCTTACACACTTCCTAATTCTTTATTAAATCCGCTTGTTAGTCCAGATGGTGGACCATCGACAAGTTCACAATTAAATCAAAGGATCGGAGCAAATGGATGCCCAATAAAAATTGAACCAGATATTTTTAATGGTAGCAGTAATAGTAGTAACACGGGACCAAGTAGCTGTCGTAATAGTATTCCACCATTATTACAGgAAATCATGGATGTCGAACATTTGTGGCAATATAATGAAGATGAATTATCGAGACTGAATCAACCGTCATCCAGATCGAATACAAATGATTTAAATACAAATCCACTTTTGGCCAGTGCTGGTCTATCATCGAACGGAGAGAATACAAATCCCGATTTAATAGCAAATCTTTGTAGTGTTGCTGATCATCGATTGTATAAAATTGTGAAATGGTGTAAAAGTTTACCACTTTTCAAGCATATTAcgATCGACGATCAAATTTGTCTTCTTATAAATTCATGGTGTGAATTGCTTTTATTTTCGTGTTGTTTTCGTTCAATAGATACTCCAGGTTCAATTAAAATTTCCTCAGGTAAATCAATAACGCTTGCACAAGCAAAATCCAGTGGTCTACagGCATGCATCGAAAGAATGCTTAACCTTACTGATCATTTGAGACGATTACGTGTTGATCGATATGAATACGTTGCCATGAAAGTTATTGTTCTCTTACAATCCGatacATCGGAGTTACGAGAACCAGTTAAAGTTAGAGAAAGTCAAGAGAAGGCATTACAAGCGTTACAAGCATATACATTGGCACATTATCCAGATTCACCAGCAAAATTTGGTGAATTGCTTCTAAGAATCCCAGAATTACAAAGAACGTGTCAGctCGGTAAAGAAATGCTAACGATAAAATCAAAAGATGGTgaagattttaatttattgatggAATTGTTACGTGGAGAACATTGA
- Protein Sequence
- MSSSSIGDTPSSTLNLSNAITSTTMTSNQQNTISMLGVNAVTTSNNNPPNIQQLASRNNISVTNIKCEDIVRPPSAPVIPSSLTTTISTPIVTATSSSSLSSSSLLTSSGSTGNFFNGGIRISVPKVDDSDESESELSNIENTKVNRRSNTTSGKNGPRPMSWEGELSETEDLMDTENSISNDKQFDDTQMSTNNKDNTRQCDIVVAKSEYDQISVETGSVIYSSGSKKFQTDLMNLKYEPGLSDATGSGLNSPLLVRSKTNLLPANPSPDSAIHSVYTHSSPSQSPLTSRHAPYTPSLSRNNSDASHSSCYSYSSEFSPTHSPIQGRHNIYGNFNGSLHHSVLYRPIVDGSCTETSQSQQQQQTQLQQQRRPDEILTENDAIPSPGISRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCVRGGPCPVTISTRKKCPACRFEKCLQKGMKLEAIREDRTRGGRSTYQCSYTLPNSLLNPLVSPDGGPSTSSQLNQRIGANGCPIKIEPDIFNGSSNSSNTGPSSCRNSIPPLLQEIMDVEHLWQYNEDELSRLNQPSSRSNTNDLNTNPLLASAGLSSNGENTNPDLIANLCSVADHRLYKIVKWCKSLPLFKHITIDDQICLLINSWCELLLFSCCFRSIDTPGSIKISSGKSITLAQAKSSGLQACIERMLNLTDHLRRLRVDRYEYVAMKVIVLLQSDTSELREPVKVRESQEKALQALQAYTLAHYPDSPAKFGELLLRIPELQRTCQLGKEMLTIKSKDGEDFNLLMELLRGEH
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00234046;
- 90% Identity
- iTF_01519404;
- 80% Identity
- iTF_01519404;