Vcin008533.1
Basic Information
- Insect
- Villa cingulata
- Gene Symbol
- lrrfip2
- Assembly
- GCA_951394055.1
- Location
- OX596018.1:6638973-6643043[-]
Transcription Factor Domain
- TF Family
- LRRFIP
- Domain
- LRRFIP domain
- PFAM
- PF09738
- TF Group
- Unclassified Structure
- Description
- LRRFIP1 is a transcriptional repressor which preferentially binds to the GC-rich consensus sequence (5'- AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA [1]. LRRFIP2 may function as activator of the canonical Wnt signalling pathway, in association with DVL3, upstream of CTNNB1/beta-catenin [2].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 1 4.3e+04 -5.6 4.9 245 245 193 193 67 249 0.55 2 4 0.11 4.5e+03 -2.1 1.6 25 74 227 272 220 297 0.44 3 4 3.1e-113 1.3e-108 364.0 34.1 1 299 339 624 339 625 0.93 4 4 0.13 5.5e+03 -2.4 4.1 220 244 653 677 629 698 0.46
Sequence Information
- Coding Sequence
- atgtcaCAAGTTCAGAAAGatcaacaacaaaatcaacagcaatcatcatcatcatcatcaagtaTAACTGCCATTCCTGGTACTGTTACTGTTGATGTTGCTGTAACTGTTGAATGTCAacataagaataataattataatagtaataataattgtaatacgAAAGATAAACTAGATATAGAAGAAGAAATATTATCTTCATCTGTAGTAAAAAtggttgatgatgataatgatccAGTTactaatagcaataataataataataataataataattgtaaaatacaAGAAGATAGTGAAGATTTTTTAAAGaatcataataaatgtaaatgtggTATGATcgttgaaaatgataaaaattctgATAATAAGATTATaatcaatgaaaaattattaacaaaagaaaaatatgtgaatgatgatgacgacgaaaATGAAGGAGGAGAAGAAGAATATGATTTTAGTGATAGTGAACTGAATGATattattaatgataataataacaataataatagtactAATGAAATTTGTAGCAATGAAACGAAtttaaaatcatcaaaattaaatttttctgatGAATGTGATAATGTAAATCAATTATTGTTAATAAACAATTCATCTAGCTCATCAAATTATGAAGATTGTAGTAACAATTCGTTTGGagaatatcaacaacaacaacaacaacaacaaattattaACGATCATGATAAAAAAACTGATAAAACCAGTGAATCAAATACATTGATTGttgtagaaaaaattaataaaatggtAAATGGTTCAAATAGTAGTACGGAACCATCATCAACAAATCATCAACagattattgaaaatttaaatcaaaataataattgcaaTGAAATTGTTgctaaaaaacataataaaaataataatgataatgatattgTTAGtggtaataatgatgatgatgatgatgataatgatgatcaaTACTATAGTGATCAAGAGGACgaatttattgttaattttctaGGAACAGCTAATGAAATAGCAGAGGCTAGATTAGCAGCACGACGACAAGCACGTGCTGAAGCTAGAGAAATACGAATGCGTGAACTGGAACGACAACAAAAGGAACAAGAACAAAATGCTGATAGAGTTTTTGATATGCAAACAGCGGCCGGTATCGATCCATTATCTAGATCTCGTCTTACGATATCTGTAGCTAATTCAACAAGGGGTAATTCAATGTCATCACGACGGAGTAGTGAAGATTCGTTGGAAGAAGAAGGACGAAGTTTACGTGATATTAGGCATGAATTAaaggaTGTTGAAGAAAGATTTCGTAAAGCGATGATAGCAAATGCCCAATTAGATAATGAAAGAGCATCACAATCGTATCAAATTCAATTACTCAAAGATAAATTGGAAGAAATGGAAGAATCGTATGCTCAGTTACAGAGAGAATATAAGGAGAAATGTCGTGATCATAACGCCTTAAAACGAAACTTGGATAAATTAGATGAGGAATTAAAATTGGTACGTGGGCAATTAGAAGAAAGGGATACACTTATAGCTGAACAGGGTTTAGTTATTGTAGTGGTGGAAAATGAAGATGGCACTGATGCCAAACGTGCTCTAGTCACTATGGAAAATGCACAACTATTAGGTTCTGTTCAAGGTTCTTTAGatGTACGGCTTAAACGATTCACTGAAGAGAAACACCAATTACAAAAAGAAGTCCAAAGCCTTCAACAGCAATTGAGTGACGTTAAAACACAGGGCAGAAGAGGTAGTTCCATGAATGGTCCTCTAGGAACTGATGATGACTATGATGCGCAAAGAGAAGCGAATAAAATTATAGCAGATTATAAATATAAACTTCAAAAAGCCGAACAAGAAATAGCTAGTCTACAAGCCAGTTTAGCACGATCCGAGACTCAAGTAATCCGTTATAAGAGTACAGCTGAAGCAGCTGAAAAAGCTGAAGCCGAATTAAAAATAGAACGAAGAAAACTTCAGAGGGAGaATCGTGAAGCTATGGAACGTCTTGAAGAATTGGAAACAACAAATAATCATCTATTAAAACgcttagataaattaaaaaatgcaaaGAGTGCATTATTAAAAGACCTCTGA
- Protein Sequence
- MSQVQKDQQQNQQQSSSSSSSITAIPGTVTVDVAVTVECQHKNNNYNSNNNCNTKDKLDIEEEILSSSVVKMVDDDNDPVTNSNNNNNNNNNCKIQEDSEDFLKNHNKCKCGMIVENDKNSDNKIIINEKLLTKEKYVNDDDDENEGGEEEYDFSDSELNDIINDNNNNNNSTNEICSNETNLKSSKLNFSDECDNVNQLLLINNSSSSSNYEDCSNNSFGEYQQQQQQQQIINDHDKKTDKTSESNTLIVVEKINKMVNGSNSSTEPSSTNHQQIIENLNQNNNCNEIVAKKHNKNNNDNDIVSGNNDDDDDDNDDQYYSDQEDEFIVNFLGTANEIAEARLAARRQARAEAREIRMRELERQQKEQEQNADRVFDMQTAAGIDPLSRSRLTISVANSTRGNSMSSRRSSEDSLEEEGRSLRDIRHELKDVEERFRKAMIANAQLDNERASQSYQIQLLKDKLEEMEESYAQLQREYKEKCRDHNALKRNLDKLDEELKLVRGQLEERDTLIAEQGLVIVVVENEDGTDAKRALVTMENAQLLGSVQGSLDVRLKRFTEEKHQLQKEVQSLQQQLSDVKTQGRRGSSMNGPLGTDDDYDAQREANKIIADYKYKLQKAEQEIASLQASLARSETQVIRYKSTAEAAEKAEAELKIERRKLQRENREAMERLEELETTNNHLLKRLDKLKNAKSALLKDL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -