Vsat000749.1
Basic Information
- Insect
- Vesta saturnalis
- Gene Symbol
- -
- Assembly
- GCA_036346205.1
- Location
- JARFJB010000001.1:7994081-7997158[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 9.5 7.6e+03 1.3 2.5 1 19 109 127 109 129 0.94 2 19 5.1 4.1e+03 2.1 0.5 6 21 196 211 194 212 0.91 3 19 0.43 3.4e+02 5.5 1.3 1 19 218 236 218 241 0.93 4 19 6e-05 0.048 17.6 1.0 3 23 346 367 345 367 0.96 5 19 9.9 7.9e+03 1.2 0.3 2 23 375 397 374 397 0.88 6 19 0.0003 0.24 15.4 0.0 1 23 417 439 417 439 0.98 7 19 0.002 1.6 12.8 0.3 2 23 443 464 442 464 0.96 8 19 3e-06 0.0024 21.7 1.9 2 23 488 509 487 509 0.94 9 19 0.23 1.8e+02 6.3 0.4 2 23 568 589 567 589 0.97 10 19 0.00062 0.5 14.4 8.4 1 21 625 645 625 647 0.95 11 19 0.056 45 8.3 1.0 3 23 669 689 667 689 0.97 12 19 0.00014 0.11 16.5 0.5 1 23 711 733 711 733 0.98 13 19 0.00057 0.45 14.5 0.1 2 23 747 769 746 769 0.95 14 19 0.00012 0.099 16.6 0.3 1 23 785 807 785 807 0.94 15 19 9.4e-05 0.075 17.0 0.0 1 23 842 865 842 865 0.95 16 19 0.003 2.4 12.3 1.3 2 23 876 897 875 897 0.97 17 19 0.00011 0.089 16.8 1.3 1 23 908 930 908 931 0.95 18 19 2e-05 0.016 19.1 0.7 2 23 940 961 939 961 0.97 19 19 0.0047 3.7 11.7 0.0 1 23 982 1005 982 1005 0.95
Sequence Information
- Coding Sequence
- ATGTGCTCTTTAGTTAAAAAACATATTGTAGTATgttcTGAAACACAGAAAAAAGCTGCAGTagtaaataatgtaaatggtgaagtTGAACTTCAAAAAATTCAATTCGCTGCAGGATTGCAATTGAAACAGCGTTCTGCTAAAACTCAACCAGTGGCTTTAGAAGATATGGCTTTGACTAAAGTGGAACAAAGTTATTTAGATAGATGCAAGACGATTATTAAAATGACCGATACTTTAACGTGCGTCTGTCATAATGAAAAATATGACCAAGTTAGGGATTTGCATATTCACTTAAAAAAGCAAAGACAATGGTTTGCTATGTTTACTTGTTATAATTGTATGATCACTTATACTGAGAGATCAGCttatatgaaacatttttgtTGTTGCTCAAAGGATTTATTACAGAATTTAAGGCGCTTAACAGAGTCACCAGTAAATCCTGAAGTAAAAATTCGattatatcaaaattataaatgtttaagGTGTAACTGTATATTTGGATTTTATGAAGATTTTTGTAGTCATTTTGATGTAGAACACATGGAATTGTTACAAAATTCTCCACCTTATGTTTGTTTTTGTTCAAAATCATTTGATGAAATGGATGAGTATAGGCAGCATTTACATATTGCGTGCTTTTTACGATACTTTTGTGATGTATGTTTTGAAGTATTTCCTAGTGTGGAAGAATTTCGCACTCATTGTGAAGAAGACCATGATAATTCGGAACCTGGTACTTTGCAACCGTACGATCCATTTAGCAAACCTAAATCCGGAAGTTTACGATCTGAGACTCCGGCATTACAAACCCGCAGGTCCTTACAGCTAGAATCTATGAAGAAAGAAAAAACCGAGGATTTACGGCAATTAACAAGACGCAGGACAATTAATTTACCTTCATCTGAAAACTCAAGTCAAATTTCAGAGGTAACACCTGAACTAGAAGAAGAAGATCCCGACTACACTCCAGAGCAAATTAAGGCTTCACAATCATTCCAACAATCATTAAAATCTTCTAATCCTGCTGCTTGTCCTGATTGTGGTAAAATATACTCCACTTACCATAACATGTTACGACATTACAAATTATCACATGATGAAACAGGAAAAATTCTTGAATGCCGCTTTTGCAATGATAAATTTAGACTTATTACCGAACTTAAAGATCATGAAGCAAATGCTCATTCTGAAGAAGAAGGAAATGAAGAAGTAAAAGAAATAGAATCGTTAGGCTCATATAATTTTTCATGCCCGGAATGTGGAGCATTGTTTCAAAATAATGATGAGTGGACACAACATATGGAAATTCACCCTAACAAGGTTTGTGATGAGTGTGACAAAGAGTTTCTAACACAGTCAGAGTTGGATAATCACAGAAGTGTTCATCTGAATATAAAAGTGTATAGGGATTCCAAAACTAAAGATTATAAGAGTGCTATGGTCAGTCCATCTCTCATTTGTGAAGTATGTGATAAAACATTTTCAACTAAAAGTGAATTACGTCATCACAAATTGTTGCATGAGAAAATGCCTGTTTTAAGTGCTCAAGAAGGTAGTCTCATAGAAGAGAAAGCAGatttaagtaagaaatttagtTGTATTCCATGTGATAAGCATTATGTTAGTTATGGAGGAATATGGGATCATAATAAGAAACACCACCCCCACCAGCAAATTGCTGCAGAATATCCCAAAAAATGTGCTTTATGTTCAAAGATGATATCGTCAAGGGGAGCGTGGTCCAATCATGAAAAAATGCACGAACGTTTAGCTAACATGAAGAAAGATGTTGAGGAAGATGAACAACCTCGAAACTCTAAATATCGATCTTCAAATGATAGCAACGATGATGATGCAGAATCATATCATACTTGTAAGAGATGTTTTAAAGTATTTTCGAGcaagtacaatttaaaaaatcacatgAAATGTCACGGAATAAATCTGAATCCAAGCCGAAGTAGCACTAAGACTGGAAAAATTATTAAGACATATTGGTGTAATATTTGTCACCAAGCTTGTCCCGGATATGCAGAATTGCAAGAGCATAAACGTGAGCATGCGTCAGAAAATAGAGCTATTGTTAAACAAGAACAGGATACTGATGATAGGACACCCCTTGTATTTGAATGTGATGAATGTTCATTGACTTTCCAGACAAGCTTTGCTTTAGCGAGACATCAAGAAAAACATATCAGAAAGCAGGAGTCAACGCAAAAATTAGTATCTGTATATTGCAAGTATTGCAAAGTACCATTCCCAAGTGTAAGTGATTTAAATGAACACATGGACAAAGATCACAGTGACATGGTCTCAAAACCTAAGGTTCAAGTACCAGGTACAAAACATACATGTAAGTTATGCAAGAAAGTTTTCGATAATCCAGGTGCACTTGCATCACATCAAGGTTGGCATAAGAGAGTCAAATTTAATAGGGTTCGAGCACAAGAACAATTAGTTAAAGCAATGGCAGTCAAGAAAATCAAACCCTTACCTAAACAACCTCCTTCTTATAAGTTTCCATGTCCAGATTGTCCAGAACAATTTCCTACAGACTCAAGCTTGCAAATCCATATTCTTGAAGTCCATCGGAATATTAATACaactttattaataatgaaatgtAATAGCTGTAAAATGAGTTTTGATAAAAAATCTGCATTTGATATACACATGCAACTGCACAGACAAGTAGAGAGTAAATCGTCGAAACCATTTTCATGCAAGTATTGTCCTGCTGGATTTAGTAGAGTAGATACGTTAAATTTACACATCAAGCAACATCACAAAGAGTACATGCCTAATGTTTTGAAATGCACTTATTGTGATCGTACATTTGATAAACAAAACGCATTATCAGTACATTTAAAAGTCCATGAGCGTCAAAAATTGTCGGGTGATAGTGCATCTCCTAAACCAACTCATAACAAACCTATTTACTTTTGTTCAATTTGTGATTTAGGATTTGCTATAGCCAAAGATTTACGTAATCATGTCGTTACTGCTCACCCATTTTGA
- Protein Sequence
- MCSLVKKHIVVCSETQKKAAVVNNVNGEVELQKIQFAAGLQLKQRSAKTQPVALEDMALTKVEQSYLDRCKTIIKMTDTLTCVCHNEKYDQVRDLHIHLKKQRQWFAMFTCYNCMITYTERSAYMKHFCCCSKDLLQNLRRLTESPVNPEVKIRLYQNYKCLRCNCIFGFYEDFCSHFDVEHMELLQNSPPYVCFCSKSFDEMDEYRQHLHIACFLRYFCDVCFEVFPSVEEFRTHCEEDHDNSEPGTLQPYDPFSKPKSGSLRSETPALQTRRSLQLESMKKEKTEDLRQLTRRRTINLPSSENSSQISEVTPELEEEDPDYTPEQIKASQSFQQSLKSSNPAACPDCGKIYSTYHNMLRHYKLSHDETGKILECRFCNDKFRLITELKDHEANAHSEEEGNEEVKEIESLGSYNFSCPECGALFQNNDEWTQHMEIHPNKVCDECDKEFLTQSELDNHRSVHLNIKVYRDSKTKDYKSAMVSPSLICEVCDKTFSTKSELRHHKLLHEKMPVLSAQEGSLIEEKADLSKKFSCIPCDKHYVSYGGIWDHNKKHHPHQQIAAEYPKKCALCSKMISSRGAWSNHEKMHERLANMKKDVEEDEQPRNSKYRSSNDSNDDDAESYHTCKRCFKVFSSKYNLKNHMKCHGINLNPSRSSTKTGKIIKTYWCNICHQACPGYAELQEHKREHASENRAIVKQEQDTDDRTPLVFECDECSLTFQTSFALARHQEKHIRKQESTQKLVSVYCKYCKVPFPSVSDLNEHMDKDHSDMVSKPKVQVPGTKHTCKLCKKVFDNPGALASHQGWHKRVKFNRVRAQEQLVKAMAVKKIKPLPKQPPSYKFPCPDCPEQFPTDSSLQIHILEVHRNINTTLLIMKCNSCKMSFDKKSAFDIHMQLHRQVESKSSKPFSCKYCPAGFSRVDTLNLHIKQHHKEYMPNVLKCTYCDRTFDKQNALSVHLKVHERQKLSGDSASPKPTHNKPIYFCSICDLGFAIAKDLRNHVVTAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01284986;
- 90% Identity
- -
- 80% Identity
- -