Ppec021616.1
Basic Information
- Insect
- Pyrocoelia pectoralis
- Gene Symbol
- -
- Assembly
- GCA_036250285.1
- Location
- CM070077.1:15500420-15515303[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 7.7 1.3e+03 1.5 0.4 3 17 60 74 58 75 0.90 2 20 0.17 30 6.7 2.0 2 19 196 213 195 218 0.91 3 20 5.4 9.4e+02 2.0 0.5 6 21 412 427 410 428 0.91 4 20 0.17 29 6.7 1.3 1 19 434 452 434 457 0.94 5 20 2.6e-05 0.0046 18.7 1.5 3 23 555 576 554 576 0.96 6 20 2.6 4.6e+02 3.0 0.2 2 23 584 606 583 606 0.88 7 20 0.00035 0.061 15.2 0.0 1 23 627 649 627 649 0.98 8 20 4.1e-05 0.0072 18.1 0.2 2 23 653 674 652 674 0.96 9 20 3.9e-06 0.00068 21.3 1.2 2 23 698 719 697 719 0.94 10 20 0.11 19 7.3 0.3 2 23 778 799 777 799 0.97 11 20 0.00075 0.13 14.1 8.4 1 21 835 855 835 857 0.95 12 20 0.067 12 8.0 1.0 3 23 879 899 877 899 0.97 13 20 5.4e-05 0.0094 17.7 0.3 1 23 921 943 921 943 0.98 14 20 0.00069 0.12 14.2 0.1 2 23 957 979 956 979 0.95 15 20 0.00015 0.026 16.3 0.3 1 23 995 1017 995 1017 0.94 16 20 0.00022 0.039 15.8 0.1 1 23 1048 1071 1048 1071 0.95 17 20 0.0036 0.63 12.0 1.3 2 23 1082 1103 1081 1103 0.97 18 20 0.00011 0.02 16.7 0.6 1 23 1114 1137 1114 1137 0.96 19 20 1.7e-05 0.003 19.3 2.6 1 23 1145 1167 1145 1167 0.99 20 20 0.0041 0.72 11.8 0.0 1 23 1188 1211 1188 1211 0.95
Sequence Information
- Coding Sequence
- ATGAGTGAACGCAGGTGGGGCAATTTTAGCTCCTGTTGTAGATTGTGTCTGACGGAAAAGTTGGGTGCGTTGAAACCAATTTTTGAGGATGCATCACTTGGTCAAGATATGATGGTTAATATTCAAGAATGCGTTAATGTTGAAATAAAACCAGATGACAAATTATCTACGATGATTTGTGAAAAATGCACTTTCCAAGTGAAGACCTGGAAAAATTTTAGACATTTCTGCTTGAATAATCAATCTAAATTAGAAACATGGATGAACGACTGGAATTCAAATAGTGGCAATGACGTTTTAGATGTGAGTATACGAATTAAAGATGAAGTATTGGATGATAATGAAGACGGTAGTGGCTCAACTACAAATAACGGAGAGAACGATGATGTACGTGTTAAAGCTGAACCTATTGATCCAATGGATGCCATTTACCATGTTGAAACTGAATTGCATTCTGACGGATATGATTATCCACCTTCTCTAAGTCCACCGCATACTGATATTTTTATGTCAGATGAGATGAACGGTCCTGTATCTATTGAAGAAGAAGAACCAGAGGAAGAGGAAATAATCTCTGATGGCAAATCGTGCTTGAAATGCAATAAATCATTTAGCAGTGTCGCAAACAGGCATAGACATGATGCAGTTTTCCATCGTGGTACTAAACGAAAGACTGATCCTCCTAAAGCTTCAgcaaataaaaaacaagcaACAATAAATTCAAATGGGGAGGTAGAACTACAAAAGATTCAGTTTGCTGCAGGGTTGCAGTTACAGCAGCGTTCAGAAAATTCTGAACCAGTTCCATTAGAAGACATGGCTCTTACAAAGGTTGAACAGAGCTATTTAGAAAGATGCAAAACATTGATAAAGATGACCGATACTTTGACTTGCGTTTGTCACAATGAAACATATGAACAAGTAAGAGATTTGCATATTCATTTGAAAAAGCAAAGGCAGTGGTTCGCAATGTTCACTTGTTACAATTGTATGATAACTTATACCGAGAGATCTGCTTATATGAAACATTTCTGCTGTTGCAAAAaggatttattgcaaaatttgaGACGTCTAACTGAGTCACCGGTAAACCCGGAAATCAAAATTCGTTTGtatcaaaattataaatgcTTAAGGTGTAATTGCATTTTCGGTTTTTACGAAGATTTTTGTAGTCATTTTGATGTGGACCACATGGAGTTGCTACAAAACTCGCCACCTTACGTCTGTTTTTGTTCAAAGTCATTTGAGGAAATGGACGATTATCGACAACATTTACATATTGCatgttttttacgttacttCTGTGATGTGTGTTTTGAAGTGTTCCCATCCGTTGAAGAATTTCGAAGACATTGTGAGGAAGATCACGACAATTCAGAACCCTGTGTGCTACAACCTTACGATCCATTCAGTAAACCTAAATCGCGTTCCGATACACCTTTACTTACAAGAAGATCATTACAGAACGACAGAAAAGATAAAAATGACGATATTCGTCACTTAACAAGACGTAGAACTATTAATTTGCCATCGTCTGAGAATTCAAGTCAAGTTTCTGAAGCTACACCGGACTTAGATGAGGAAGATCCAGATTATACTCCCGATCAGCCTAAGGCCATGCAAGCTTTTCAAACTTTGAAATCGTCGAATCCTGCTGCCTGCCCGGATTGTGGCAAAACATACTCAACTTACCATAATATGTTACGTCATTACAAACTATCGCATGATGAAGCAGGAAAAATTCTTGAATGTCGATACTGTAATGATAAGTTCAGGCTCATTACTGAACTTAAAGATCATGAAGCGAATGCGCACGGTGAAGATGATGATACAAGAACGGAAAATGATTTTGATGCGTCTACTCGACCATTTAACTTTTCGTGTCCTGATTGCGGTGCATTGTTTAACAATACCGAAGATTGGGCTAAACACATGGAATCTCATCCTAAGAAGGTATGCGATGAATGTGATAAAGAATTTGTCTCGCAATCTGATTTAGATAATCACAGAAGCGTTCATTTGAATCTGAAAGTTTACAGGGACTCCGAGACTCAAGATTATAAAAGTGCTATTGTTAGTCCATCTTTAATTTGTGAAATATGTGATAAGACGTTTGCAAATAAAAGTGAATTAAGACACCATAAATTACTGCACGAGAAAATGCCCGTTTTGAGTGCACAAGATGGTAGTCTTATAGAAGAGAAAACAGACTTAAGTAAGAAATTCAGTTGTATTCCGTGCGACAAGCACTACGTTAGTTATGGTGGAATCTGGGACCATAACAAAAAACATCATCCCAATCAACAAATTAGTTCGGAGTATCCCAAGAAGTGCGGTTTGTGTTCAAAAGTGATCTCCTCAAGGGGAGCGTGgtcgaatcacgaaaaaatgCACGAACGTTTGGCCAATATGAAGCAAGATCTTGATGACGATGGTGATGAAATTCAATTCAAACACCAATCTGCACCAGATAGTAATGACGACGATGCCGAATCTTATCACACTTGTAAAAGATGTTTTAAGGTATTTTcaagtaaatataatttaaagaatCATATGAAATGTCACGGTATTAATCTCAATACAAGTCGTAGTAGTACAAAAACTGGGAAGATTATAAAGACATACTGGTGTAATATTTGTCACCAAGCTTGTCCCGGTTATGCAGAACTGCAAGAACATAAGCGAGAACATTTGTCAGAAAGTCGGGCAATTGTAAAACAAGAGGAAGATTCCGATGACAGTAAACCATTAGTATTTGAATGCGATGAATGTTCATTAACATTCCCTACAAATTTTGCTTTAGCGAGACATCAAGAAAAACATATCAAACGGGCGGAAACAACGCAGAAGTTAGTATCTGTTTACTGTAAGTATTGTAAAGTACCCTTCCCCAGTGTGAGCGATTTGAATGATCATATGGATAAGGATCATAGCGATATGACCTCTAAACCGAAAGTCCAGCAACCCGGAACCAAACATACCTGTAAATTGTGTAAGAAAGTTTTTGACAATCCGGGTGCACTTGCTTCTCATCAAGGTTGGCACAAGAGGGTGAAGTTTAATAGAGTTCGTGCTCAGGAACAGCTTGTAAAAGCAATGGCGGCAAAGAAGCATAAGCCAGCTTCTTCATACAACTTTCAGTGCCCAAATTGTCCGGCCCGTTTTCCTTCAGATTCAAGTTTGCAAATCCACATTCTTGAAACACATCGCAATATTAATACAACTGTATTGATTATGAAATGTAACAGTTGTAAAATGAGCTTCGACAAAAAGTCTGCATTTGATATTCATATGCAACTACACAAACAAGTGGAGAGCAAGTCCTCGAAAGCGTTCTCATGCAAATATTGTCCTGCAGGATTCAGTAGAACGGATACTCTCaatttacatataaaacaaaatcacaGAGAGTACTTATCCGATAACTTTAGATGTGTTCATTGTGATCGTacatttgaaaaacaaaatgctTTAACAGTACATTTGAAAACTCACGACCGTCAGAAATTAACAGGTGAAACCGCCTCCCCTAAACCAAGTCATAACAAAAGTATCtatttttgttcaatttgtGATTTAGGATTTGCTATAGCCAAAGATTTACGTAATCATGTCCTTTCTGCACATcctttttaa
- Protein Sequence
- MSERRWGNFSSCCRLCLTEKLGALKPIFEDASLGQDMMVNIQECVNVEIKPDDKLSTMICEKCTFQVKTWKNFRHFCLNNQSKLETWMNDWNSNSGNDVLDVSIRIKDEVLDDNEDGSGSTTNNGENDDVRVKAEPIDPMDAIYHVETELHSDGYDYPPSLSPPHTDIFMSDEMNGPVSIEEEEPEEEEIISDGKSCLKCNKSFSSVANRHRHDAVFHRGTKRKTDPPKASANKKQATINSNGEVELQKIQFAAGLQLQQRSENSEPVPLEDMALTKVEQSYLERCKTLIKMTDTLTCVCHNETYEQVRDLHIHLKKQRQWFAMFTCYNCMITYTERSAYMKHFCCCKKDLLQNLRRLTESPVNPEIKIRLYQNYKCLRCNCIFGFYEDFCSHFDVDHMELLQNSPPYVCFCSKSFEEMDDYRQHLHIACFLRYFCDVCFEVFPSVEEFRRHCEEDHDNSEPCVLQPYDPFSKPKSRSDTPLLTRRSLQNDRKDKNDDIRHLTRRRTINLPSSENSSQVSEATPDLDEEDPDYTPDQPKAMQAFQTLKSSNPAACPDCGKTYSTYHNMLRHYKLSHDEAGKILECRYCNDKFRLITELKDHEANAHGEDDDTRTENDFDASTRPFNFSCPDCGALFNNTEDWAKHMESHPKKVCDECDKEFVSQSDLDNHRSVHLNLKVYRDSETQDYKSAIVSPSLICEICDKTFANKSELRHHKLLHEKMPVLSAQDGSLIEEKTDLSKKFSCIPCDKHYVSYGGIWDHNKKHHPNQQISSEYPKKCGLCSKVISSRGAWSNHEKMHERLANMKQDLDDDGDEIQFKHQSAPDSNDDDAESYHTCKRCFKVFSSKYNLKNHMKCHGINLNTSRSSTKTGKIIKTYWCNICHQACPGYAELQEHKREHLSESRAIVKQEEDSDDSKPLVFECDECSLTFPTNFALARHQEKHIKRAETTQKLVSVYCKYCKVPFPSVSDLNDHMDKDHSDMTSKPKVQQPGTKHTCKLCKKVFDNPGALASHQGWHKRVKFNRVRAQEQLVKAMAAKKHKPASSYNFQCPNCPARFPSDSSLQIHILETHRNINTTVLIMKCNSCKMSFDKKSAFDIHMQLHKQVESKSSKAFSCKYCPAGFSRTDTLNLHIKQNHREYLSDNFRCVHCDRTFEKQNALTVHLKTHDRQKLTGETASPKPSHNKSIYFCSICDLGFAIAKDLRNHVLSAHPF
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01518307;
- 90% Identity
- -
- 80% Identity
- -