Vvul008759.1
Basic Information
- Insect
- Vespula vulgaris
- Gene Symbol
- -
- Assembly
- GCA_905475345.1
- Location
- FR997675.1:1303740-1308201[+]
Transcription Factor Domain
- TF Family
- zf-LITAF-like
- Domain
- zf-LITAF-like domain
- PFAM
- PF10601
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family display a conserved zinc ribbon structure [3] with the motif C-XX-C- separated from the more C-terminal HX-C(P)X-C-X4-G-R motif by a variable region of usually 25-30 (hydrophobic) residues. Although it belongs to one of the zinc finger's fold groups (zinc ribbon), this particular domain was first identified in LPS-induced tumour necrosis alpha factor (LITAF) which is produced in mammalian cells after being challenged with lipopolysaccharide (LPS)[2]. The hydrophobic region probably inserts into the membrane rather than traversing it. Such an insertion brings together the N- and C-terminal C-XX-C motifs to form a compact Zn2+-binding structure [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.26 5.1e+02 0.3 0.1 3 15 8 20 6 27 0.75 2 3 2e-14 3.9e-11 42.4 5.8 5 69 94 157 90 158 0.94 3 3 7.5e-13 1.5e-09 37.3 2.6 5 69 235 299 232 300 0.94
Sequence Information
- Coding Sequence
- ATGGTAGAGGGAACGCAGACCTCCATAGCCACGTGGTGTCCCATATGCGATAAACGTGTAAGCGATAAAGGAAAAGACACCGATCGACTTTTAGGGCACGTTCGAAGAAATCATCGAAAAATCTCTGCTCTGGGATTGGATAATCACGAAAACGGTGAACAAATTTTGGAAAGACAACAATCGAACGGCACGGCACAAGCAAAGCTTTCTAATACGAAGGAAAAAGATAGAAAGAGAATCTACACGACCCGTGTGGACACATGGAAGTCGCACGACGAGAAAAAGATCTGTCCTCAATGCAGAAAGGAACTTGTACCAGCATTGCACACACGCAGACACAACTTGACAACGTCTCATATGGCAGCGACTTGTCTCCTGGGATGTTGGCCATTTTGTTTTATACCGTTAATGAAACGCACGAAGAAGATTCGCATGATCTGTCCGGCCTGTGGATACGTTTACGGGACTTACGAGTATAAAAATAACGGCCTGGCTCCCTGTCAACCGGATTCCGAGAACTCGCAAAAAGCGCACTTTTATATACCTCAGAAAGTAGAACGCGATCGGTCTGAAAACGAAGCCAAGCAGCGCTCGTGGATCTCCGGAACGAAGTTATCCAGAAAGATTTGGCCTTTTGGAAATAGTAAACGAAAAAGGAGTGTTTTTTCGACCAGAGTGGAAACTTGGAAGTATCACGACAAGAGCTTATTATGTCCGGTGTGTAACGAGGATGCTCTACCTATAGTTTTCACAAAGAGACACATGTTTTCGAGCTCGAGACTTGGTGCTACTTGCTTGTTAGGATGTTGGCCATTGTGTTTCGTACCTCTGATGTTGAGTCGAGAGAGACAAGTGAGGCTGGTATGTCCGTTCTGCGGACATAATTACGGAAATTACGCACAGGCGGAAAATAAAAGCGATGACCCGTGGCATCCTCGTCGTGGACAGCGACGATTAGTCGAAATTACGAGCTCGAAGTTGGACCCTCCCAGTGAACGCGAACATGAACTTAACCCAAACTCGGAATTAGCTGTACTAGCTTATCAAGGATTATGGGAGGTTCTTTTCAACAAACTCGAAACAAAATTTCTGTTAGCCGGTAAAGAAAAAGGATTAACTTTATCGTCGCCTAGTACTTCTCACTCGAGAACGTTTAACGATTCGAAACAGGTGCGGGATGCTTCTGAACAAACAGAGAACGTCAACGAGAGAGAAGGTAAAGAAGAAGAAGAAGAAAGAGGAGGAGGAGGAGGAGGAGGAGGAGTCGAAAGAGGAGGTGCAAGTGTTTCAGAAGTTTTACAGTATCCTAACGGAGAGACAATGTTCCAACCTTCGGAAGGTTGCACCCTTTGTTCGAGGCAGGTCACGGGAGATCGTTTCTACGAGACACATCTCGACGAGTTTGACCTGGATTACGATTCCGATTGGTCCATGCGTAATCGTTATCGCGTTAAACGAAATACACGTCCGTACGATACGTTCTTTGACGATTAA
- Protein Sequence
- MVEGTQTSIATWCPICDKRVSDKGKDTDRLLGHVRRNHRKISALGLDNHENGEQILERQQSNGTAQAKLSNTKEKDRKRIYTTRVDTWKSHDEKKICPQCRKELVPALHTRRHNLTTSHMAATCLLGCWPFCFIPLMKRTKKIRMICPACGYVYGTYEYKNNGLAPCQPDSENSQKAHFYIPQKVERDRSENEAKQRSWISGTKLSRKIWPFGNSKRKRSVFSTRVETWKYHDKSLLCPVCNEDALPIVFTKRHMFSSSRLGATCLLGCWPLCFVPLMLSRERQVRLVCPFCGHNYGNYAQAENKSDDPWHPRRGQRRLVEITSSKLDPPSEREHELNPNSELAVLAYQGLWEVLFNKLETKFLLAGKEKGLTLSSPSTSHSRTFNDSKQVRDASEQTENVNEREGKEEEEERGGGGGGGGVERGGASVSEVLQYPNGETMFQPSEGCTLCSRQVTGDRFYETHLDEFDLDYDSDWSMRNRYRVKRNTRPYDTFFDD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -