Vpen004622.1
Basic Information
- Insect
- Vespula pensylvanica
- Gene Symbol
- -
- Assembly
- GCA_014466175.1
- Location
- CM025348.1:1026083-1029520[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 4.1e-13 5.5e-10 38.2 0.0 1 39 251 290 251 294 0.90 2 4 1.5e-12 2e-09 36.5 0.1 2 39 306 343 305 346 0.94 3 4 5.3e-19 7.1e-16 57.1 0.0 2 45 361 405 360 405 0.97 4 4 6.1e-19 8.2e-16 56.9 0.1 1 42 412 454 412 455 0.97
Sequence Information
- Coding Sequence
- ATGAAAATTAGTGATTGTAATTCGGGGTCGCTTTTGAAAACGGCCGACCAGCTGAAAATTAAGGGCCTCTGTGAGGTTCCTGAAAGCAAGGACGGGCCACCATCAGTGAGCTTGAGCTCACCGCCAAGAGAACCTGGTACACCAAGATTAAACTTTACCAGGTTGAAGAGACATCATCCGAGGTATAAGAGAGCGAGAACGTCATTCGAGCCTCGTGCCACTGATTCCAGGCACTACGATAGATATAAAGAAGAGGAGACTAGCGATAGTTACGGTCGCAATAACAAAGAGAATCACAGAGACTGGCAGGCCGAAGATGAAGAGTGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCACCCAGATCCTGGAGAGGTAGATCTGCCTCCGGAAACACAGCCCACACCACCGAGCGCTACTTTGGTCGGTACCACTATTACTCATCTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATAGCGTGAAGATCAAGTTCGAAACTCTACACACGATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGATAGAGCGAGCGTAAGCTCAAAAAATGCAGCGGACAGCGACAATATGATGATGATCACGCCTGAACTTCTCGGACTCATGCCTTCTGGCAGTTCGATTCACTCGGACTCGGGTGAAAACAATTCGAGAGGTCATTCTGGACAATCGAGTTCACATCATCATGGTACCAAATCTTGGACTCAGGACGACATGGACGCCGCGTTGGAAGCCTTAAGGAATCACGACATGAGTCTTACGAAAGCATCTGCTACATTTGGTATCCCATCGACGACGCTCTGGCAAAGAGCACATCGTTTAGGCATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGACGAGAGTTTAAATAATGCGTTAGAAGCATTAAGGACAGGAACGATCTCAGCTAACAAAGCGTCGAAAGCGTTTGGTATACCTTCCAGTACTCTCTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCTTTTAACGCGAGTCCTACTACCTGGTCACCTGCCGATCTAGATCGTGCTTTAGAAGCAATAAGATCCGGTCAGACGTCTGTCCAAAGAGCCTCGACAGAATTTGGTATTCCCACGGGAACTCTCTATGGTAGGTGTAAAAGAGAAGGGATTGAACTTAGTAGAAGTAATCCTACGCCTTGGAGTGAAGATGCTATGACTGAAGCTCTCGAAGCTGTTAGACTAGGTCACATGAGCATCAATCAAGCAGCTATTCATTATAACTTACCTTACTCCTCGTTGTACGGACGTTTTAAAAGAGGCAAATACGAAGAACCAGTAGTCGGTGATTTATCACAGGACGGCACCAATCCACATTTTCATCAAAGTCCAACGCAGAATCACTCGTCCACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- MKISDCNSGSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGTPRLNFTRLKRHHPRYKRARTSFEPRATDSRHYDRYKEEETSDSYGRNNKENHRDWQAEDEECDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGTKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNPHFHQSPTQNHSSTIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00306165;
- 90% Identity
- iTF_00306165;
- 80% Identity
- -