Basic Information

Insect: Vespula germanica
Gene Symbol: RREB1
Assembly: GCA_905340365.1
Location: HG996529.1:2173145-2181197[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 1.6 98 3.4 0.7 1 23 65 87 65 87 0.93

2 16 0.00049 0.03 14.5 0.3 1 23 101 123 101 123 0.97

3 16 2.1e-06 0.00013 22.0 0.8 1 23 129 152 129 152 0.97

4 16 0.11 6.8 7.1 0.1 1 23 248 272 248 272 0.92

5 16 1.1 68 3.9 1.7 2 23 278 300 278 300 0.91

6 16 4 2.4e+02 2.2 1.7 1 20 356 375 356 377 0.85

7 16 0.19 12 6.3 0.1 1 23 492 514 492 514 0.96

8 16 2.8e-05 0.0017 18.4 0.3 1 23 523 545 523 545 0.98

9 16 0.0012 0.075 13.2 2.8 1 23 551 574 551 574 0.97

10 16 0.0013 0.081 13.1 2.7 1 23 971 994 971 994 0.96

11 16 0.00065 0.04 14.1 0.1 3 23 1275 1295 1273 1295 0.97

12 16 4.7 2.9e+02 2.0 4.1 1 23 1301 1324 1301 1324 0.95

13 16 0.0041 0.25 11.6 2.2 1 23 1361 1385 1361 1385 0.97

14 16 0.78 48 4.4 7.8 1 23 1470 1493 1470 1493 0.98

15 16 0.02 1.2 9.4 0.3 2 23 1548 1569 1547 1569 0.92

16 16 0.012 0.73 10.1 6.0 1 23 1575 1597 1575 1597 0.98

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	1.6	98	3.4	0.7	1	23	65	87	65	87	0.93
2	16	0.00049	0.03	14.5	0.3	1	23	101	123	101	123	0.97
3	16	2.1e-06	0.00013	22.0	0.8	1	23	129	152	129	152	0.97
4	16	0.11	6.8	7.1	0.1	1	23	248	272	248	272	0.92
5	16	1.1	68	3.9	1.7	2	23	278	300	278	300	0.91
6	16	4	2.4e+02	2.2	1.7	1	20	356	375	356	377	0.85
7	16	0.19	12	6.3	0.1	1	23	492	514	492	514	0.96
8	16	2.8e-05	0.0017	18.4	0.3	1	23	523	545	523	545	0.98
9	16	0.0012	0.075	13.2	2.8	1	23	551	574	551	574	0.97
10	16	0.0013	0.081	13.1	2.7	1	23	971	994	971	994	0.96
11	16	0.00065	0.04	14.1	0.1	3	23	1275	1295	1273	1295	0.97
12	16	4.7	2.9e+02	2.0	4.1	1	23	1301	1324	1301	1324	0.95
13	16	0.0041	0.25	11.6	2.2	1	23	1361	1385	1361	1385	0.97
14	16	0.78	48	4.4	7.8	1	23	1470	1493	1470	1493	0.98
15	16	0.02	1.2	9.4	0.3	2	23	1548	1569	1547	1569	0.92
16	16	0.012	0.73	10.1	6.0	1	23	1575	1597	1575	1597	0.98

Sequence Information

Coding Sequence: ATGGTATTTAAACCTCCCCACCAGTTTCGATTCGATAGTCAAAGATCGGCCGATCCAAAGCTGCCGGTGACCATAAAGAACGAACCGGAACAGGAACAAGAACaggaacaagaacaagaacaagaacagaCTGAGACACAGGTGGATACAGCAGCATCTCCGTCGTCCAGTGTAGATTTACCCGAAAGCGCGCATCCTTGTCCAGCTTGTCCTACCATACTTTTGACAACTCACGATTTAACGAATCATCTACGAGAACATAATTCACCTAGGAGCACGGAATACGGCGGTGAGGAAGACTACTGCTGTGCTATATGTCAAAAAGTATTGAGTTCGGCAAGTTCCTTGGATCGCCATGTTCTTGTACATTCGCGCGAACGACCTTTCAAGTGCAAATATTGTGATATAGCTTTCACAACGAATGGTAATATGAACAGACATGTTAAAAGTGCTCACCGCGGTGAAAGATCACCACCACAGAGTTATACCGAATCGGAAAGTACTAGTAACGACTCCGAAAACTCATCCAGAAGACAACACATAGAAGAACACAACAACAACGAGATATCGAAACAAACTTCGCCAAATTTTATGATCAGAGAGAGATTAGCGAAGAATTTAACGGCCAAACGAAAGTCGCCATCTTTTACCAGAGAAGATGAAAGCCCACGTAAACACAAGATATTGTTGAACAATTCGAGGACCGAGATCAAACGTACCCCTGTACAAACACAAAATTCTTTCAACTGTCCGGTTTGTAATCGGCAAGATTTTGCTACGAGCGGCCTCTTGGAAACGCATTTGGAACAAAATCATCCAGAATTCACGGCAAGGTGCGAACCCTGTAAtctatcttttaaaaatcatcGGGTTTTGAATCTACACCGTTATATGATACACTTTTCTGACTACCCCGTTGGTATCCCTACGAGAAATTTACGTAATTCCGTAGTAGGATTCGACGATTTAACTTTTGTTGACTTTACCTCGGCTAAATTCCCAACTATTGCTAGGGTGATGTGCGAGCAAGCGATGCATCGGCCAGCATCCGGAGAAGGTACCAACTTTCAATGCGCCAAGTGTTCAAGGGCATTTCCTTGTTTCAAGTCTATGAAAGAACACCAAAATGAATGTGGTAAGTGTAGGTCAAGTTTGCAATGTAGACCGATAGATGTTGGGGAATCACAGAGAGACGATTTTTTTGCGGGCCTCGAATTACACAATAAAGCTGCTTTGACAGAGGCTAAAGACGGAAAGGATTTAGCGGATATAGAAAGCATTTTGTCCGTTACGTCGGGCCCGATTTTACAAAACTTTCCCCGCTCGGATGCTAGTACACCCGagaataatatgaaatttaattcgaGCGTTGGTTCTTCTGGTTCATCAGGAACGATGTCATCGGAATATCACGAGGAAGAAGCTCAGGATTTATTCGCTGCCGAATTCAGGAAGATGAAGTTGAAAGGAGAATTCCCCTGCCGATTATGCACAGCTATATTCCCTAATTTGAGAGCATTGAAGGGACATAATCGTGCTCACATGGGTGTTGCGCCAGGAGTACCCTATCCTTGCAACATGTGTCCTTATACGAGTACGGACAAGGCCACTCTTGTAAGGCATCTCAGATCTCACAACGGCGATCGGCCGTACGAGTGTTCGCTTTGCAATTACGCTTTTACTACAAAAGCAAACTGCGAGAGGCACGTTAGAAATCGTCATGGTAAATTAACCAGGGAAGACATTAAGAGCGTTCTTATATATCACCCGAACGAGGATTCGACGAATGAGAACATCGGTAGAAGTTCGCCAAGAGTGACAAAGGACGAACCAAGAAAAAGTTTGATGTATCCGAACGACCGTGAGGACTCTCATCAGCAACAACAACGTTATCTGTCGATGCCGGTGGACTCGAAAAGTGATATTAGAGTGATAGACGAGGCAAAACTACCTAGCCCAGGATTGGCCTCGTCCCTTCGTAGTATTATCGTGAATCATTGCGAAACCAGCGATACTTACTCGAGATCGAACATACCATCGTCCGGGCTTATTCCGAGGAGTATAGAAGAGGCCACTACATCTCAAGATCAAAGTGGAAGGGCTGAGGATGATCTTGAATCAAGGTCATCTAACGAAAGCGTGTCTCTAGTCAATGATACCGAATCAGATATGCACCAAAGAATTCAAGCTAGTCCGATTAACTTGAAGAAAACGTCTAACGTACCTAACGCCGGAAATTCGAACCAGGATGGCCCCTTGGACCTCAGCATGGACGTTCTAGATTTGAGTAAAAAGGCCAAGGAGAGAAACGGTGCTGGCTCTTCTAGATCGAACGAACATTATCCCGGCAATGACCGAAGAGAATTTTACGATTCAACCAGCCAATTGTTCCTCACACAGGCTCTTTTACAAGCGAGCCAAGGAACTTCGCCGGGAACTTCGCCTGGAACTTCGCAAGGAACCTCGCAGGCAACCTCCCTACAGAATTTCTACGCTAATGCCCAATTGATCTACCGTAATTTAGGATCACTTTCGGCAGGAGTAAATGCTGGAATTCTATCTCCGTATATGTTCAACCCGCACCTGTTCGGACAAGATCTTAACATCAGAGATAGAATTCAAAAGGAGTTCGCTCGGGGCCTACAATTGACCAGCGGTGGTACGTTGGTCGATCCATCTCACGGAAATACAAGTTTCGCTAGTTTTCCGCAATCTAACGAGGGCTCGTCTCAACCTGTAAACGAGCAAAACGATTATACGAAATTGCTGGCTTCTAAAATGACCAATAAGAATTTATCGCCACGCGAAAAGCCAGACAATTCGCCTTCCTCGAATTCGGTGAAAATGGTCATAAAAAACGGCGTTCTAATGCCGAAACAAAAACAACGAAGATATCGTACGGAAAGACCGTTCTCTTGCGGACATTGCTCGGCCAAGTTCACCCTGCGTAGCAACATGGAGAGACATATAAAACAGCAACATCCTGAATTTTGGAGTCAACGACCTCGAGGTGGTCATTCAACGAGAGGCAGACCACCGGCGAACCATCcgactttaattaaaaattctggACAGTCAAATTCGCAGCCTTCGCAGTCCTACTCCAGCATTCTACCCAAAACCGAGTCGTCATCGGCGATAGAATCTGGCAGACATTCGATTTCCGACCAAGTTAAATACGCGATATTGGCACAACAATTGAAGGCCAACAAAATGGACGACAACGACACCGACGAAGAACTCATCATCGACGAGGATCCTACCGATAAAGAGATGCAAGAATCTCAAGAACAAGGAGAACGTTCTACGAGTTTGTTGAGAGGACAATTGGAAGGAAACGAGTCCAACAGAGACGTTTCGGTTAAGGACGAAATCTCAGAAAGAGACTCGTCCGACGTATTTCACAACGAACAGGCCGAGGAACGTAACGATACCAATGAGAACGGCCGGACTTCTAGAAACGAACATATCCCTGAAGTTAAAACTGAAGATCCATCCGGAGATAATAATTCAAGACACACCTTCAAGATGGATATCTGTAACGATACCGTTCAAGATAAACAGGAAGATAATAACGCTGATCTCGCTAGCGTTTCGGAATTATTGGACAATGCTTCTCATCAATATCAACACTTTCAACCTCAATATCTGAGCGACGAGGAAGGTTTGGTCGCATCGACGAGCGACTTCAACAATTCTGGAAGCGAGGACAAATCTGACTCTGTCAATTCCGGTAATTCGAATAACGCCtcgtcgaaaaagaaaaagaagaaaaaaaagaagaagaaatctgCTTACTCGATGGCACCTAACAGAGTGATATGTCCCTATTGCGAACGGCCATTTCCATGGACTTCGTCCCTTAGACGACATATTCTTACGCACACGGGTCAAAAGCCCTATCAATGTATATACTGTTCACTTTTGTTCACGACCAAATCGAATTGCGATCGTCACCTTTTGAGAAAGCACAAAACAAATCCGAACAAAATACGACGCGTTAGAAATTCATCTTCGCCGGATAGTCAGGTTGTCAATACGAACAATACGTTCTCGATGAGAAACGTACCGGAGAGGCCGTACAAATGTAATCAGTGTCCGAGTTCGACCTTTTCGACGTTAGGTAATTTAAAGAAACATCGTTCGACCAAACACTCGCGCAAAAACAAATCGAGATCCGTATCGCCCTCGAGCGAACCACAAAACAGTCCTTTACAACCGTCGAAACAAAACGATCCTAGCGATTACGAGAGCCAATCGTCTAGCATTTCTGAAAATACCGAACAACAACAGGTGTCGCCGGTTGAAacacaaaaacaaaattcgaATACATCACCGACTAACAACGAATTGTCAAGATCGCGAAGAACTTCACCTAGATCCTCGCCCGGTCCTAACGACGTTCCATTCAAATGTCATCTATGTGACTGCGGATTCGCCGATCGTCACGATTGTTTGGAACATATCAAAACGAATCATAAAAAATCGTACGAGATGTTAGTTGCTAAGGGTGCTATGGATATGGATATCGACGGTTTGGAAGATCaaccagcaccaccaccaccgccaccgccgcaGCAACATCTTAGCGAtggggaggaaagaaaaggccGATTTCCAGATTACAGTAATAGAAAAGTGGTCTGTGCCTTTTGCATAAGAAGATTCTGGTCGGCCGAGGATCTCCGTCGTCACATGAGAACTCACACTGGTGAAAGACCATTCTCCTGTGACATATGCTTTCGACGATTCACTTTGAAACACAGCATGCTACGTCATCGTAAAAAGCACGAATCGGTTGACTCTACCATGTACGTTGGTACCAGCGGCGACGAAGAAAATTCACCGACTCAGCCACCAACGATAACACCGCGTACCCAACAACAACCACCCGTTTTAATGGCAACAAATATCAACAATTCGAGGATCCAAGATAGAATTACGTCGTCGGTAGCAACCGGCGATGCTCCTGGTGGTTTCATGAGATTTAATACCTTCGAAAAATTAACTACATTTACCGGCAAATTGACCACCAATACACAGCATAATGTCAATTCAGAATTATCCGAAAATACCGACAACGATTTGATCTCTAATCTTTTGGGCATACGCGATAAAAGTTTCATCGATAAGGTTCTCCAAGCATCACCGGACGATGCCGCTAAATTATTAGGCGTACAACGTAGTCACGAGTGA
Protein Sequence: MVFKPPHQFRFDSQRSADPKLPVTIKNEPEQEQEQEQEQEQEQTETQVDTAASPSSSVDLPESAHPCPACPTILLTTHDLTNHLREHNSPRSTEYGGEEDYCCAICQKVLSSASSLDRHVLVHSRERPFKCKYCDIAFTTNGNMNRHVKSAHRGERSPPQSYTESESTSNDSENSSRRQHIEEHNNNEISKQTSPNFMIRERLAKNLTAKRKSPSFTREDESPRKHKILLNNSRTEIKRTPVQTQNSFNCPVCNRQDFATSGLLETHLEQNHPEFTARCEPCNLSFKNHRVLNLHRYMIHFSDYPVGIPTRNLRNSVVGFDDLTFVDFTSAKFPTIARVMCEQAMHRPASGEGTNFQCAKCSRAFPCFKSMKEHQNECGKCRSSLQCRPIDVGESQRDDFFAGLELHNKAALTEAKDGKDLADIESILSVTSGPILQNFPRSDASTPENNMKFNSSVGSSGSSGTMSSEYHEEEAQDLFAAEFRKMKLKGEFPCRLCTAIFPNLRALKGHNRAHMGVAPGVPYPCNMCPYTSTDKATLVRHLRSHNGDRPYECSLCNYAFTTKANCERHVRNRHGKLTREDIKSVLIYHPNEDSTNENIGRSSPRVTKDEPRKSLMYPNDREDSHQQQQRYLSMPVDSKSDIRVIDEAKLPSPGLASSLRSIIVNHCETSDTYSRSNIPSSGLIPRSIEEATTSQDQSGRAEDDLESRSSNESVSLVNDTESDMHQRIQASPINLKKTSNVPNAGNSNQDGPLDLSMDVLDLSKKAKERNGAGSSRSNEHYPGNDRREFYDSTSQLFLTQALLQASQGTSPGTSPGTSQGTSQATSLQNFYANAQLIYRNLGSLSAGVNAGILSPYMFNPHLFGQDLNIRDRIQKEFARGLQLTSGGTLVDPSHGNTSFASFPQSNEGSSQPVNEQNDYTKLLASKMTNKNLSPREKPDNSPSSNSVKMVIKNGVLMPKQKQRRYRTERPFSCGHCSAKFTLRSNMERHIKQQHPEFWSQRPRGGHSTRGRPPANHPTLIKNSGQSNSQPSQSYSSILPKTESSSAIESGRHSISDQVKYAILAQQLKANKMDDNDTDEELIIDEDPTDKEMQESQEQGERSTSLLRGQLEGNESNRDVSVKDEISERDSSDVFHNEQAEERNDTNENGRTSRNEHIPEVKTEDPSGDNNSRHTFKMDICNDTVQDKQEDNNADLASVSELLDNASHQYQHFQPQYLSDEEGLVASTSDFNNSGSEDKSDSVNSGNSNNASSKKKKKKKKKKKSAYSMAPNRVICPYCERPFPWTSSLRRHILTHTGQKPYQCIYCSLLFTTKSNCDRHLLRKHKTNPNKIRRVRNSSSPDSQVVNTNNTFSMRNVPERPYKCNQCPSSTFSTLGNLKKHRSTKHSRKNKSRSVSPSSEPQNSPLQPSKQNDPSDYESQSSSISENTEQQQVSPVETQKQNSNTSPTNNELSRSRRTSPRSSPGPNDVPFKCHLCDCGFADRHDCLEHIKTNHKKSYEMLVAKGAMDMDIDGLEDQPAPPPPPPPQQHLSDGEERKGRFPDYSNRKVVCAFCIRRFWSAEDLRRHMRTHTGERPFSCDICFRRFTLKHSMLRHRKKHESVDSTMYVGTSGDEENSPTQPPTITPRTQQQPPVLMATNINNSRIQDRITSSVATGDAPGGFMRFNTFEKLTTFTGKLTTNTQHNVNSELSENTDNDLISNLLGIRDKSFIDKVLQASPDDAAKLLGVQRSHE*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01512393;
90% Identity: iTF_01513024;
80% Identity: -