Vger001859.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- -
- Assembly
- GCA_905340365.1
- Location
- HG996529.1:5317344-5320237[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.00029 0.018 15.2 5.9 2 23 390 411 389 411 0.97 2 15 0.017 1 9.7 3.9 1 23 417 440 417 440 0.95 3 15 4.5e-06 0.00028 20.9 1.7 2 23 536 557 535 557 0.97 4 15 4.5e-06 0.00028 20.9 2.7 1 23 563 585 563 585 0.98 5 15 0.17 10 6.5 1.8 1 23 591 613 591 613 0.97 6 15 1.1e-06 6.7e-05 22.8 1.4 1 23 628 650 628 650 0.98 7 15 4.1e-06 0.00025 21.0 1.2 3 23 658 678 656 678 0.98 8 15 7.6e-06 0.00047 20.2 1.9 1 23 684 706 684 706 0.98 9 15 0.00089 0.055 13.7 0.2 1 23 712 734 712 734 0.99 10 15 2e-05 0.0012 18.8 0.3 1 23 740 763 740 763 0.92 11 15 2e-05 0.0012 18.8 1.3 1 23 769 791 769 791 0.98 12 15 0.00044 0.027 14.6 4.7 1 23 797 819 797 819 0.98 13 15 3.7e-06 0.00022 21.2 0.2 1 23 825 848 825 848 0.96 14 15 9.8e-06 0.0006 19.8 0.5 1 23 854 876 854 876 0.95 15 15 3.9e-06 0.00024 21.1 4.5 1 23 882 904 882 904 0.99
Sequence Information
- Coding Sequence
- ATGGATAAAAATCTTTCTGTGGATACAGATTGGACTTCTgggaacaaatatataaaaagttcatTGCATCAATTTTTTACTGTCAACAAGAATAATCATAACGttgtatctataaaaaaagaagcagaatttcaagagaaaaaacatAACTTTCAAGTCTTAAAGAATATGAAACATTCTGAAAATTCtatgaacaaagaaaaagaaaaaataaattatgaagaaGCTTCTCCTTCAAATATAACAACAaaTCATAAATCACAGCCTTTAAATTCGATGTCAActaagataattattaatcatcatGAAGGTGCACATGTAACATTGTGTCGTAGAGGTCAAATTGATGTTATAGAAATGCCATTGGAACAAACATATTTTTACAAGTACTTTCTGGTTTACGAAGATTTACCATCAAAATTTGTAGTATTACATGCTTTACACAATAACACAGCAAAAGAAGTAGCAAATAAGTTACTAGATATATTAGCAATTATTGGAGCTCCTCAAGTTCTACAAAGTGGAAATGGGCGTAATTTTGCTGAACAAATTGTCAAAGAATTACGTATCTTATGGAAAGATTTTATCATATTACATGGAAATGTGTGCAAATGTGAAGAAGATAGTagagattttaaaaatttattaaaatgttgGTTAAACAAAAATCCTGGAAAAACATGGTATGAAGGtttgaaatttatacaaatcttTCAAAATTCAACATATCGTTGTCAAAATGGTAAAATACCATGTGATATATTATTTGGACAAAATATTCATCAAGAGtttcaaaaattaatcatCGCTAAAAATACAACAAATGATATGTGGACAGAAGAAGAATGGATAAATgatacattaaataaaaaacaaaataatactattacaGTTGATAATTTGACTCATATTTCtggaaatataatttcaataaatacaaGCGATacagataaaaatgataattgCCATAATGAATATGATGATGTATCGtgtaataatcataaaaacaATCATGAtgattcttttcaatttcataaGAATTCAAACAACTTTAAATTTGTTAGTGTTAAAAGTGAAACATTTTTGGATAATTTACAAATGGAAGATTCAACATGTGCAGAGCCAAATATTGAAGAACATAATTTTCGTATAAACAACCAAAATTTAACATGTAAAATTTGTCATAAACAATACATGAAATTGGGACATTTGAAAAATCACATGAAAACTCATATTAAGAAACGACAATTTGATTGCACATTGTGCAATAAAACATTCCACATCttgaaattatatgaaaaacatATGCAACAGTTTCATGAGAATCATCAACAAATTAACAGTCATACAGATtgcataaaaaatgataatagttATAGTAAATATGCTGatataagtattaataaaaaaagaagtatggAAACAGAGGAAATTCCAAAGATACATAAATCAATTATGAAATCTCATCAAAGTAGTAATATAGTACGGAACCATACGAATAAATGTGTtagatctataaaaaaatcaaattctaTCAATGGAAGACAATTTtctaggaaaaaagaagaaaatagaatatcaAGATTGAATGGAAATCCAACATTAGAATGTTCATATTGTAAACAAAAATTCAGTTTTCCTAGTGTATTAAAAAGACACATGCGTTCCCATACAAATGAAAGACCTTATGTttgtaaaatatgtaataaaagttttaaacAGTTAGGTCATCTTAGTCAACATTCATTGACACACAAAGATTACAGATCTTTTCAATGTGCAATATGTTGTGTTAAATTTGAATCTCTGGATTTGCTTAAAACTCATTCTCAGTCACATCAAGGTGAATCAATACTAAAgtcaaaagaaatttatcgtcTTTTCGAATGTGATAATTGTAAAAAGGTTTTTACAACAAAAAGTGTGTTAGAACGTCATATATTTACTCATACACACGAACGTCAATTTGGATGTAAAATATGTGGTAAACGATTTAAGCAAGCTGGTCATGTAAAATCTCATATGTTAGTTCATACTGGAGAGCGAAAATTTGAATGTACTATATGTTCAAAAAGATTTAGTTTATCAAATTCGCTAAAAAAACATATGTACATTCATAATGGTGAAAAACCATATCAATGTGACGTGTGTGGAGCGagatttcttgaaaaaaggAATCTTAATGGACATCTTATGACACATACAAACGAAAGACCATTTTCTTGCAAAATATGTGGCAAACGATACACGTTAGCAGATACACTACGTCGGCACGTCAGTGCTGCTCATGAAGATGGTCGAACGTATCAATGTGAAATTTGCGCAAAAATGTTTAAACAGCTTGCACATTTGTCTGTTCACAAGAAAGTACACAATGATGAACGTCCATTCCAATGTCATCTTtgcgaaaaaaatttcaaacacAAAAATGTTCTGAAATCTCATTTAGCAATTCACGCAAATATTCGACCTTTTGAATGTGACATTTGCAAAGCAACATTTGTTAGAAAAACTAATTTGCAAACACATATAGCATCGGCACATATGAATGAACGTCCCTATGCTTGTACAATTTGTGGTAAACGATTTAAACAAATAAGTCATTTAAATGGTCACGTTGTTGTTCATAGTAATTCAATGCCTTATCAGTGTGATTTTTGCGATCGTCGTTGTAACAGACTGgataatttaaagaaacacATGCGTCTTCatacaaaagataaagaatag
- Protein Sequence
- MDKNLSVDTDWTSGNKYIKSSLHQFFTVNKNNHNVVSIKKEAEFQEKKHNFQVLKNMKHSENSMNKEKEKINYEEASPSNITTNHKSQPLNSMSTKIIINHHEGAHVTLCRRGQIDVIEMPLEQTYFYKYFLVYEDLPSKFVVLHALHNNTAKEVANKLLDILAIIGAPQVLQSGNGRNFAEQIVKELRILWKDFIILHGNVCKCEEDSRDFKNLLKCWLNKNPGKTWYEGLKFIQIFQNSTYRCQNGKIPCDILFGQNIHQEFQKLIIAKNTTNDMWTEEEWINDTLNKKQNNTITVDNLTHISGNIISINTSDTDKNDNCHNEYDDVSCNNHKNNHDDSFQFHKNSNNFKFVSVKSETFLDNLQMEDSTCAEPNIEEHNFRINNQNLTCKICHKQYMKLGHLKNHMKTHIKKRQFDCTLCNKTFHILKLYEKHMQQFHENHQQINSHTDCIKNDNSYSKYADISINKKRSMETEEIPKIHKSIMKSHQSSNIVRNHTNKCVRSIKKSNSINGRQFSRKKEENRISRLNGNPTLECSYCKQKFSFPSVLKRHMRSHTNERPYVCKICNKSFKQLGHLSQHSLTHKDYRSFQCAICCVKFESLDLLKTHSQSHQGESILKSKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFECTICSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANIRPFECDICKATFVRKTNLQTHIASAHMNERPYACTICGKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKDKE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01090135;
- 90% Identity
- iTF_01514953;
- 80% Identity
- -