Vger009760.1
Basic Information
- Insect
- Vespula germanica
- Gene Symbol
- bab1
- Assembly
- GCA_905340365.1
- Location
- HG996542.1:5050576-5072883[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 7e-13 9.1e-10 37.8 0.0 1 39 392 431 392 435 0.90 2 4 2.5e-12 3.2e-09 36.0 0.1 2 39 447 484 446 487 0.94 3 4 9e-19 1.2e-15 56.6 0.0 2 45 502 546 501 546 0.97 4 4 1e-18 1.3e-15 56.5 0.1 1 42 553 595 553 596 0.97
Sequence Information
- Coding Sequence
- ATGGAGACAGATCGTTATTGGGGCGTACACTACAGCGGCGGCATGGCTGGGCAGCACTACTGCCTACGTTGGAACAACTACCAGTCCAACATGACATCCGTTTTCCATCAACTCCTGCAAAACGAGGCCTTCGTAGACGTCACCCTGGCATGTAACGAAGCTTCGTTGAAGGCACACAAGGTGGTCCTCTCGGCCTGCAGTTCCTACTTTCAGAAGCTCCTACTCTCAAATCCATGTAAACATCCAACGATCATCATGCCGCAGGACGTATGCTTCAACGATCTCAAATTCATCATAGAGTTCGTCTACAGGGGCGAGATCGACGTTTCTCAAGCAGAACTTCAGtcGCTTTTGAAAACGGCCGACCAGCTGAAAATTAAGGGCCTCTGCGAGGTTCCTGAAAGCAAGGACGGGCCACCATCAGTGAGCTTGAGCTCACCGCCAAGAGAACCTGGTACACCAAGATTAAACTTTACCAGGTTGAAGAGACATCATCCGAGGTATAAGAGAGCGAGAACGTCATTCGAGCCTCGTGCCACTGATTCCAGGCACTACGATAGATATAAAGAGGAGGAGACTAGCGATAGTTACGGTCGCAATAACAAAGAGAATCACAGAGACTGGCAGGCCGAAGATGAAGAGTGTACGGAGGTGGcagcggcagcagcagcagtagttcTGGAAAGCTGCCAACGTAACAgtaacaacagcagcaacggTAACGGtacaaacaacaacaacaataacgGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCACCCAGATCCTGGAGAGGTAGATCTGCCTCCGGAAACACAGCCCACACCACCGAGCGCTACTTTGGTCGGTACCACTATTACTCATCTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATAGCGTGAAGATCAAGTTCGAAACTCTACACACGATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGATAGAGCGAGCGTAAGCTCAAAAAATGCAGCGGACAGCGACAATATGATGATGATCACGCCTGAACTTCTCGGACTCATGCCTTCTGGCAGTTCGATTCACTCGGACTCGGGTGAAAACAATTCGAGAGGTCATTCTGGACAATCGAGTTCACATCATCATGGTACCAAATCTTGGACTCAGGACGACATGGACGCCGCGTTGGAAGCCTTAAGGAATCACGACATGAGTCTTACGAAAGCATCTGCTACGTTTGGTATCCCATCGACGACGCTCTGGCAAAGAGCACATCGTTTAGGCATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGACGAGAGTTTAAATAATGCGTTAGAAGCATTAAGGACAGGAACGATCTCAGCTAACAAAGCGTCGAAAGCGTTTGGTATACCTTCCAGTACTCTCTACAAAATAGCGAGAAGAGAGGGTATTAGATTAGCTGCACCTTTTAACGCGAGTCCTACTACCTGGTCACCTGCCGATCTGGATCGTGCTTTAGAAGCAATAAGATCTGGTCAGACGTCTGTCCAAAGAGCCTCGACAGAATTTGGTATTCCCACGGGAACTCTCTATGGTAGGTGTAAAAGAGAAGGGATTGAACTTAGTAGAAGTAATCCTACGCCTTGGAGTGAAGATGCTATGACTGAAGCTCTCGAAGCTGTTagACTAGGTCACATGAGCATCAATCAAGCAGCTATTCATTATAACTTACCTTACTCCTCGTTGTACGGACGTTTTAAAAGAGGCAAATACGAAGAACCAGTAGTCGGTGATTTATCACAGGACGGCACCAATCCACATTTTCATCAAAGTCCAACGCAGAATCACTCGTCCACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- METDRYWGVHYSGGMAGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGTPRLNFTRLKRHHPRYKRARTSFEPRATDSRHYDRYKEEETSDSYGRNNKENHRDWQAEDEECTEVAAAAAAVVLESCQRNSNNSSNGNGTNNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGTKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNPHFHQSPTQNHSSTIPDQMSYQGS*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01513566;