Basic Information

Insect: Vespa mandarinia
Gene Symbol: Clamp_1
Assembly: GCA_014083535.1
Location: JACHAV010000039.1:506175-512534[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 8 9.8e-06 0.0007 19.4 2.4 1 23 131 153 131 153 0.98

2 8 0.00019 0.014 15.3 0.4 1 23 185 208 185 208 0.93

3 8 5.4e-05 0.0039 17.1 2.6 1 23 308 330 308 330 0.97

4 8 7.4e-06 0.00053 19.8 0.1 1 23 336 358 336 358 0.98

5 8 1.3e-06 9.5e-05 22.2 1.7 1 23 364 386 364 386 0.98

6 8 2.8e-07 2e-05 24.3 1.9 1 23 392 414 392 414 0.99

7 8 2.9e-06 0.00021 21.1 1.0 1 23 420 442 420 442 0.98

8 8 2.8e-05 0.002 18.0 0.6 1 23 448 470 448 470 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	8	9.8e-06	0.0007	19.4	2.4	1	23	131	153	131	153	0.98
2	8	0.00019	0.014	15.3	0.4	1	23	185	208	185	208	0.93
3	8	5.4e-05	0.0039	17.1	2.6	1	23	308	330	308	330	0.97
4	8	7.4e-06	0.00053	19.8	0.1	1	23	336	358	336	358	0.98
5	8	1.3e-06	9.5e-05	22.2	1.7	1	23	364	386	364	386	0.98
6	8	2.8e-07	2e-05	24.3	1.9	1	23	392	414	392	414	0.99
7	8	2.9e-06	0.00021	21.1	1.0	1	23	420	442	420	442	0.98
8	8	2.8e-05	0.002	18.0	0.6	1	23	448	470	448	470	0.97

Sequence Information

Coding Sequence: ATGTTCACACAAACTGAACAAACCAACAGTTTCACTCAAACGGAGCAAAGTAATTCAAGTTACGGAGATCAAAGACAGcAAGCAGCAATGTTTGACCCACAACAAATTCAACAGCAGCAAGCTGCACAGGGCCAACAATCGCAGCAACAGCAATCTCAACAGATGTATGTAacagataaaaaggaagataaatcaCAACAACAATCTGCAACAGCagaatttcctttttattataatgtgAACATGCTTCAAAAAGTTCAGACAAATGCAGTGAGCACAATTGGTGCCATAACAACAGATGATAAAGGTTGTTATCGTTTTGATGTCCAGCCGGTTggatataatacattattaaatcAGATGAGCATTGCGGCTGCAACTAATGCAACCTTTAAATGTGATATATGTGGTCTGGTGTTTGGTCACATGAGTTTGTTGAATCATCATAAACGAATTCACAACACTACACCGAGTAATTTGCAACAACAGCCACAACAAGTTGTTGTCCAAACACCAACGACAGTGACTGTAGCTACTACACCTGAAAGACCGTATACTTGTGATGTCTGTGGAGCTTGTTTTGCACTGCCTGGAGAATTGAAAAGTCATAAAACAAATATGCACCAAAAACCAAAAGTGCAAATATGTGAAGATTGTGGTAGTGAAGATCCGTGCGAACATCATCCcacaaaaatcaaaaagaCAATTAAACCTGGTCATCATCCAGTAAAACGAAGGGGAGTTACTAGTGTTACCAAATGTCATAAATGTAATGGCACAGGAATAATATTCATCGGTAAACACGACGAAAAACTAGATTCTGGAATCAGTTCCCTCGCAAAGTGTGGCGGCTGCAAGGCAACAGGCCGCATCATCATAGGAAGTGGCAAACAAAACAGTCAGAACCAAGCGGAGAAGCCATTTCATTGTAATGTATGTGATGGTACATTCTCCCGGTATTCTTCACTTTGGTCTCATAAGCGGTTGCACTCGGGTGATAAACCATTCAAGTGCGAAGTCTGTGGTTTAGCTTTTGCAAAAGctgcttatttgaaaaatcatgGACGAGTTCACACCGGAGAAAAACCATTTAAATGCAGTGTCTGTGGGATGCAATTCTCACAGAGTCCTCATCTGAAAAATCATGAAAGAATTCATTCTGGCGAACGTCCGTATCAATGTGAAGTCTGCGAAAAAACATTTGCTAGACATTCAACTCTCTGGAATCATAGGAGAATTCATACTGGTGAAAAGCCTTACAGATGTAATATTTGTGGTTCCGCCTTCAATCAAGCAACACACCTGAAAAATCACGCGAAAGTTCATACTGGTGAGAAACCACATAGATGTGATATATGCGAGATAGGATTTTCTGACCGTTTCGCATTAAAACGACATCGTGCAATTCATGAAAAGTATGGACAAACGGCTCGAAACCAGAACACAAATAATCCAAGTAATGCACAACAAACAAATGCAAGTAgtcaacagcagcagcagcagcagcaacctCAACAAGGGCAACAAGGGCAACAAGTTGTTGTAGTGAATGCCACAACTCCTGTAACTGTCAGTCAGGGTCAAGGTCAAGCAGTCATGCTCGAAGAAGTCTACAAATGTCAAGTGGCCTTCCCAGAACCCAAATGA
Protein Sequence: MFTQTEQTNSFTQTEQSNSSYGDQRQQAAMFDPQQIQQQQAAQGQQSQQQQSQQMYVTDKKEDKSQQQSATAEFPFYYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSIAAATNATFKCDICGLVFGHMSLLNHHKRIHNTTPSNLQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKIKKTIKPGHHPVKRRGVTSVTKCHKCNGTGIIFIGKHDEKLDSGISSLAKCGGCKATGRIIIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARNQNTNNPSNAQQTNASSQQQQQQQQPQQGQQGQQVVVVNATTPVTVSQGQGQAVMLEEVYKCQVAFPEPK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00292456;
90% Identity: iTF_00774007;
80% Identity: -