Hros002025.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Hedychridium roseum
Gene Symbol
-
Assembly
GCA_963989215.1
Location
OZ022306.1:73263-77283[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 8 1.4e-05 0.0012 19.2 2.4 1 23 165 187 165 187 0.98
2 8 0.00028 0.024 15.2 0.4 1 23 220 243 220 243 0.93
3 8 8e-05 0.0067 16.9 2.6 1 23 343 365 343 365 0.97
4 8 1.1e-05 0.00091 19.6 0.1 1 23 371 393 371 393 0.98
5 8 1.9e-06 0.00016 22.0 1.7 1 23 399 421 399 421 0.98
6 8 4.1e-07 3.5e-05 24.1 1.9 1 23 427 449 427 449 0.99
7 8 4.2e-06 0.00036 20.9 1.0 1 23 455 477 455 477 0.98
8 8 4.1e-05 0.0034 17.8 0.6 1 23 483 505 483 505 0.97

Sequence Information

Coding Sequence
ATGGCCCTAGAATCAAATGGCAACAACGTGGTGTGGTTGAATGCAACCCGTCCTGATCAGATACAGCAGAGTCAACCTGTTGAGCAGCCACTAAAGTGTTCCATGTTTACCCAAACTGAGCAAACTAATAGCTTCACTCAAACTGAGCAGAGCAACTCAAGTTACGGGGATCAGAGACAGGCAGCCATGTTCGACCCTCAGCAAATCCAGCAGCAGCAGGCTGCACAGGGTCAGCAGTCGCAGCAGCAACAATCTCAGCAGATGTATGTAACgtcagaaaaaaaagaggataAATCCCAGCAACAAACTGCGACTGCTGAGTTTCCATTTTACTACAATGTCAACATGCTCCAGAAGGTTCAAACTAATGCGGTGAGCACAATTGGTGCGATCACTACCGACGACAAGGGTTGTTATCGTTTCGATGTGCAACCTGTCGGTTATAACACATTGTTGAATCAGATGAGCATAGCGACTGCCACCAATGCAACCTTCAAGTGTGACATTTGTGGATTGGTTTTTGGGCACATGAGTCTACTAAATCACCATAAGCGAATTCATAACACGACGCCGAGCAATCTACAGCAGCAACAGCCGCAACAAGTTGTTGTGCAGACACCAACGACGGTTACCGTGGCCACTACACCAGAGCGGCCCTATACTTGTGACGTATGTGGAGCATGTTTTGCATTGCCAGGAGAGCTCAAGAGTCACAAAACTAATATGCATCAAAAGCCAAAAGTCCAAATCTGCGAGGACTGCGGTAGTGAAGATCCCTGCGAGCACCATCCCACGAAAGTGAAAAAGACGATTAAACCTGGTCATCATCCCGTGAAACGAAGGGGGGTCACTAGTTTCACAAAATGCCACAAGTGTAATGGCACGGGTATAATTTTTATCGGTAAACCCGCCGATAAACTAGATTCTGGAGTCGGTTCCCTCACAAAGTGCGCCGACTGCAAGGCAACAGGCCGCATCATCATAGGAAGTGGTAAACAAAACAGTCAAAATCAAGCGGAGAAGCCATTTCATTGTAACGTTTGCGATGGTACATTCTCTCGGTATTCGTCCCTTTGGTCCCATAAGAGACTTCATTCCGGAGACAAGCCATTCAAGTGTGAGGTCTGTGGTTTAGCTTTCGCAAAAGCGGCTTACTTGAAAAATCACGGAAGAGTACATACAGGCGAAAAGCCTTTCAAATGTAGCGTTTGCGGTATGCAATTCTCACAAAGCCCTCATCTTAAGAATCACGAAAGAATTCATTCTGGCGAACGCCCTTATCAGTGTGAAGTTTGTGAAAAGACATTCGCCCGACACTCGACGTTGTGGAATCACCGGAGGATTCATACTGGCGAGAAACCCTATAGATGTAATATATGTGGCTCAGCATTCAATCAAGCCACGCATCTGAAGAATCATGCGAAAGTGCACACCGGCGAAAAACCACACAGATGTGATATATGCGAGATAGGCTTTTCAGACCGTTTCGCGTTGAAACGTCATCGTGCTATTCATGAGAAATATGGACAGACGGCTCGAACTCAGAGTGCGAATAATCCGAGTAATGCCCAAGCTAACGCTAGTaatcagcagcagcagcagcagcaacagcagcagcagcaacaacagcagcaacagcagcaacagcaacagcaacaacagcagcagcaacaacagcagcagcagcagcagcagcagcaaccaCAGCAGGGTCAACAAGGCCAACAGGTTGTCGTGGTGAATGCCACCACTCCTGTCACCGTTAGCCAGGGTCAAGGTCAGGCGGTAATGCTCGAGGAAGTCTACAAATGCCAAGTGGCCTTCCCAGAGCCTAAATGA
Protein Sequence
MALESNGNNVVWLNATRPDQIQQSQPVEQPLKCSMFTQTEQTNSFTQTEQSNSSYGDQRQAAMFDPQQIQQQQAAQGQQSQQQQSQQMYVTSEKKEDKSQQQTATAEFPFYYNVNMLQKVQTNAVSTIGAITTDDKGCYRFDVQPVGYNTLLNQMSIATATNATFKCDICGLVFGHMSLLNHHKRIHNTTPSNLQQQQPQQVVVQTPTTVTVATTPERPYTCDVCGACFALPGELKSHKTNMHQKPKVQICEDCGSEDPCEHHPTKVKKTIKPGHHPVKRRGVTSFTKCHKCNGTGIIFIGKPADKLDSGVGSLTKCADCKATGRIIIGSGKQNSQNQAEKPFHCNVCDGTFSRYSSLWSHKRLHSGDKPFKCEVCGLAFAKAAYLKNHGRVHTGEKPFKCSVCGMQFSQSPHLKNHERIHSGERPYQCEVCEKTFARHSTLWNHRRIHTGEKPYRCNICGSAFNQATHLKNHAKVHTGEKPHRCDICEIGFSDRFALKRHRAIHEKYGQTARTQSANNPSNAQANASNQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQPQQGQQGQQVVVVNATTPVTVSQGQGQAVMLEEVYKCQVAFPEPK