Vman011302.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vespa mandarinia
Gene Symbol
-
Assembly
GCA_014083535.1
Location
JACHAV010000094.1:84167-89168[+]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 19 0.16 11 6.2 6.3 2 23 263 285 262 285 0.97
2 19 0.011 0.79 9.8 2.1 1 23 336 358 336 358 0.97
3 19 0.077 5.5 7.2 0.5 1 23 407 429 407 429 0.98
4 19 0.0048 0.34 11.0 0.1 1 20 484 503 484 505 0.93
5 19 0.00034 0.024 14.6 1.0 1 23 545 567 545 567 0.97
6 19 0.0002 0.014 15.3 0.4 1 23 615 637 615 637 0.97
7 19 0.00053 0.038 14.0 0.1 1 23 643 665 643 665 0.97
8 19 7e-07 5e-05 23.0 0.5 2 23 709 731 709 731 0.95
9 19 0.015 1.1 9.4 1.1 1 23 738 761 738 761 0.92
10 19 0.0077 0.56 10.3 2.3 2 23 768 790 767 790 0.91
11 19 0.018 1.3 9.1 0.0 2 23 798 819 797 819 0.90
12 19 0.012 0.85 9.7 0.1 1 20 879 898 879 898 0.97
13 19 0.0011 0.081 12.9 0.4 2 23 918 939 917 939 0.95
14 19 6.5e-05 0.0047 16.8 2.8 1 23 953 975 953 975 0.97
15 19 2.2e-05 0.0016 18.3 2.8 1 23 995 1018 995 1018 0.96
16 19 0.007 0.5 10.4 1.4 2 23 1073 1095 1072 1095 0.94
17 19 0.00017 0.012 15.5 0.6 2 23 1122 1144 1121 1144 0.93
18 19 6.7 4.8e+02 1.1 1.7 2 23 1181 1203 1180 1203 0.92
19 19 0.055 4 7.6 0.8 2 23 1233 1255 1233 1255 0.94

Sequence Information

Coding Sequence
ATGGACGACATCGTTGAACTATCAAACGTTGAAAACGTGTGCAGATTGTGTCTATCTGTTGAAGAACCAAAATCGTCAATCTTCGGGGCACAAGATTCCTCTGCTGGTGTGCCACTCGTTACTAAAATACAGGCATGCCTATCACTTCAGATTTTGTCTACCGACAAAGTATCTACATTGATATGTTCATCATGTGTAAACAATGTAAATCAGTGGTACAGCTACAAGGAAACTTGTTTTCGTTCTCAGGACAAATTACAGAAATGGCTGGAAACTCATCCACAGGCAAACCCAGTggttgtaaatataaaagaggaaCCTATGGATATAGATTACTGCGAAGATAACGCTAAAATATCTGAATCCAACAATGAATCAAGCTCTTGTGTCATTAATCATGTAAAATCTGGGAGTAAACTTTATTCTAAAGATGAAGCTCGGACAGAAGTACAAATTGACAAGACACGTAAAGATAAAGAATCTAAAGCTTTTCAGCCAATTCCATCGAAGAATACAGACAGGGAGGAGCATAAACtggataaacatttttatggTGTATCGATAAAAACTGAACCAGaagatgattatgatactGATTGTACAATAGAAATAGAATCAGTCACTGATAATGAATTACTATTGAATCCAATGGCGATCGCTAGTAAAGAAGACAGAATTATGGAAGCTGACTCGACTCAAAAATCAAATGCAGCTACTCCAAGCagtagaaagaagatgaaacgTGGTCCTCATACGCATTTCCGAGGTACTCGGGTTTATAAACAAAAGTGTACTCATTgtcaaataaatttacattctaagtacacatatataagacACATGCAAAGATTTCATAGTGACGAATGCGAAAATAAAGAGTTATCTAAGTCGATGTCTGTTGATGAAGAAGAATCGATTGAAGATGTGGAAGACGAATTAACGAGTATGGAGAACGATGCACCATTGACGGAGGTACAACAAAATATAATCAGCCAACTGAAGACATTCTCGTGTTACTCGTGTCAGCAAACTTTTATCGATAGAAGAAATACGCTTTCTCATATTCGTCAACATATGCCAGACTTAAGACCATACACTTGTATCGCATGTTTAACGGAATTTTCTGATCGTTCTATGTACAAATTACACTGCAGTGCATCCTTCGAGTGTGCTATGAAAATCGCGTTAGTTATACCTAAGGAAGGAGACGAAAAGTATTTCACTTGTAACATGTGTTTACGACCGATGCCAAACAGAAAGGAATTATTAAGTCATTTATCAAAACATTCGGATAAACAATACGAAGAAATGATGTCACCAATGAGATCTCCGCCCAAGTTACAACCTATGGCACCTTTGCCGTGcccgaagaaagaaatattgccGAAAACATCTCAGATGAATAGGGTCATTTTTGGACCTTACAAGAATGGCGATCCAGCGCATAATCACGCCTGTGATTTATGTGGCATGATTTACAGATACAAACCTAATCTGTTAAAGCATCGTGTAATCTGTATCAGGTTATCACCGGAAGTAAGAACTTGTTACAGATGTATTCATTGTGGTATGACTTATCTtgtctttaaaaaatttcataatcatATCACTATCgatcataaaaagaaagaattcgtTTGTTTCGAATGTAACGCTAAGTTCAGATCACCGAGTGATTATCTGACGCATTACGAGAAGCATCGGCTGATGAACGTGGATCAACAGCATCGGCCGGTTGCTAGTAATCAAATTATGTCGCCTCATCGTGGACAGAGTCCTTTAAAATCGTGGAGTGACAACGAGGAAGCTACGGTATCGAGACGAAGCGTCGACAGTCAACGATATGTTTGTAATCTTTGTGATCAGGATTTTACTACGAGAGCTAAATTGGCTGAACATAAAAACCTTCATCTAAAAGTAAAGATATATTCGTGCGTTATTTGCCGTAGTATGTTTAGCAGCGCTGGTGCTTTAGAAATTCATATGAAAGATCATGGTATCGAAGATCCACAAGAAAGAAACGCCAATAGTTCTTGCGTTGAATATGAACGACTCGACGATAATTCACAAGGAATGAATTCTATTAATGCAAGTGCGATCTCAGATTCTGgcgaacgaagaaacgaatgtAACATATGCGGAAAGGTATTCTCCAATTATCCGAATCTGAGAAGACACTTTAGGAATATTCACAAGGACAGCAAAGCACGTTTTACTTGTATACGTTGCTCATTATCCTTCAAAACTAAAGAGCTTTACGAACGTCATGCGAGACTTGATCACAAAACGAAAGTCATGCTGATGTGTCGTCAGTGTCCTAAAACATTTACTTTCAAAGCTAATTTGGATCTCCATTGTAGGAGTGCTCACGGAGATAAATCTGGTAATCAAGAGTGTGATATTTGTGGTAAAGTCTTTTTAGAGGAAGCCTCGTTAAAGATTCATCGAGGCTGGCACAACCGAGCAAATTCGCGTTTGTATACTCGATCCTTCTTGAACAATGAGATTAAAACTGCAACTTCGCTCTCTCCTACTGAGGGCAGCGTCCGTAGTTTAGTTGTTACATCGCCTGAACGTCCAGCTAGAGCAAGAAAATCTTTTCCTAATCCACCACCTACGAAGCCACAGAACAATTACCAGTGTCAAGTATGCGATGGCAAATTCGAAGATGTAGTTGAATTGAGAAAACATCTGTGGGATGTCCATTGTGCTCGTAACAAACCAGAGAAAAGTTTTTCAGGTGACGAACTTCAATGTCAGTTATGTACCAATATTTTTCCTGATCAGAAGAGTTTAAAAACACATATGGATTGGCATAAAGCGAATCCGATATTGAGCGACTTACAAAAGCAAACTTTCCCTTGTGATATATGCGGCAAACATTACAGTTCTAAGAAAGTCTTGACAAAACACAAAAAGCTTCACAAAGCAAACACGGTAGCTTCGATGAAGTTTCAATCACTCGGTAGAAAGAACGCTCAATTCTTCTGCaacatttgtcgaaaaatcttcAGTAGCAATCAATCATTGCAACGACATAGAATGTCTTTTCACAGTGACTTACAGGCTTCATTACGGTCTAATCAAGCACAGAATAGTAGTACTCGACGAATTTCCAGCGAGGAATACAAATCAAAGAAAACAGTTTTTGAATTAGAAGAAGATGCTGCGAAGGAATTTACTTTAAATTTAACCAATGCCGGTAAGAAACCGGTTACTTGTCATTTGTGTAAGAAGATATTTCCGAACATGAGTGTTTTATATAAACACAAACAACTGATTCACAAACCAAGAGTAATAAAAGTGATCGGTAAAATATCAACAAATGAGTGCGTTCCCATACCAAGCGCTGATGGTCGAGTTTCGTGCAATTTGTGCGGTAAACAGTTCTCGGCATTGTCAAATTTGAGACAACACTTTTCCGTAAAGCATAGAAACAATCCAAAAAGTCGTTGCACCACAGGCAGCTGTAACCCTACGTATTCGGCTCAATCGCAGTCTCTAAAGACTGAAAGTTTGCCGCACAAAGCAATGATTCTCTGCTGCAAACTCTGCAATCGTCACGTTTGGAGCAGAGAAGAGATAGCTAATCATATGCTCTCTGTACATGGAACAGCTTATGAACCTGATAACAACAGTAATTTTCATAGGGAAACTGATCTTACCACTTATGTTGTCGAAGGTGCCGTTAATGCGACCTGTCCTCGTTGCAATATCAAGTATCCTAACAATAGAGCTATGAAGATTCATTACTTTAAATTTCACGAAGCTACGGACTAA
Protein Sequence
MDDIVELSNVENVCRLCLSVEEPKSSIFGAQDSSAGVPLVTKIQACLSLQILSTDKVSTLICSSCVNNVNQWYSYKETCFRSQDKLQKWLETHPQANPVVVNIKEEPMDIDYCEDNAKISESNNESSSCVINHVKSGSKLYSKDEARTEVQIDKTRKDKESKAFQPIPSKNTDREEHKLDKHFYGVSIKTEPEDDYDTDCTIEIESVTDNELLLNPMAIASKEDRIMEADSTQKSNAATPSSRKKMKRGPHTHFRGTRVYKQKCTHCQINLHSKYTYIRHMQRFHSDECENKELSKSMSVDEEESIEDVEDELTSMENDAPLTEVQQNIISQLKTFSCYSCQQTFIDRRNTLSHIRQHMPDLRPYTCIACLTEFSDRSMYKLHCSASFECAMKIALVIPKEGDEKYFTCNMCLRPMPNRKELLSHLSKHSDKQYEEMMSPMRSPPKLQPMAPLPCPKKEILPKTSQMNRVIFGPYKNGDPAHNHACDLCGMIYRYKPNLLKHRVICIRLSPEVRTCYRCIHCGMTYLVFKKFHNHITIDHKKKEFVCFECNAKFRSPSDYLTHYEKHRLMNVDQQHRPVASNQIMSPHRGQSPLKSWSDNEEATVSRRSVDSQRYVCNLCDQDFTTRAKLAEHKNLHLKVKIYSCVICRSMFSSAGALEIHMKDHGIEDPQERNANSSCVEYERLDDNSQGMNSINASAISDSGERRNECNICGKVFSNYPNLRRHFRNIHKDSKARFTCIRCSLSFKTKELYERHARLDHKTKVMLMCRQCPKTFTFKANLDLHCRSAHGDKSGNQECDICGKVFLEEASLKIHRGWHNRANSRLYTRSFLNNEIKTATSLSPTEGSVRSLVVTSPERPARARKSFPNPPPTKPQNNYQCQVCDGKFEDVVELRKHLWDVHCARNKPEKSFSGDELQCQLCTNIFPDQKSLKTHMDWHKANPILSDLQKQTFPCDICGKHYSSKKVLTKHKKLHKANTVASMKFQSLGRKNAQFFCNICRKIFSSNQSLQRHRMSFHSDLQASLRSNQAQNSSTRRISSEEYKSKKTVFELEEDAAKEFTLNLTNAGKKPVTCHLCKKIFPNMSVLYKHKQLIHKPRVIKVIGKISTNECVPIPSADGRVSCNLCGKQFSALSNLRQHFSVKHRNNPKSRCTTGSCNPTYSAQSQSLKTESLPHKAMILCCKLCNRHVWSREEIANHMLSVHGTAYEPDNNSNFHRETDLTTYVVEGAVNATCPRCNIKYPNNRAMKIHYFKFHEATD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01233839;
90% Identity
iTF_01513642;
80% Identity
iTF_01512953;