Vman004593.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vespa mandarinia
Gene Symbol
-
Assembly
GCA_014083535.1
Location
JACHAV010000041.1:108934-112966[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 15 0.0012 0.083 12.9 5.3 2 23 401 422 400 422 0.97
2 15 0.0038 0.27 11.3 2.0 1 23 428 451 428 451 0.95
3 15 3.4e-06 0.00024 20.9 1.7 2 23 547 568 546 568 0.97
4 15 3.3e-06 0.00024 20.9 2.7 1 23 574 596 574 596 0.98
5 15 0.13 9.1 6.5 1.8 1 23 602 624 602 624 0.97
6 15 8.2e-07 5.9e-05 22.8 1.4 1 23 639 661 639 661 0.98
7 15 3.1e-06 0.00022 21.0 1.2 3 23 669 689 667 689 0.98
8 15 5.7e-06 0.00041 20.1 1.9 1 23 695 717 695 717 0.98
9 15 0.00066 0.048 13.6 0.2 1 23 723 745 723 745 0.99
10 15 1.5e-05 0.0011 18.8 0.3 1 23 751 774 751 774 0.92
11 15 1.5e-05 0.0011 18.8 1.3 1 23 780 802 780 802 0.98
12 15 0.00033 0.024 14.6 4.7 1 23 808 830 808 830 0.98
13 15 2.7e-06 0.0002 21.2 0.2 1 23 836 859 836 859 0.96
14 15 7.3e-06 0.00053 19.8 0.5 1 23 865 887 865 887 0.95
15 15 2.9e-06 0.00021 21.1 4.5 1 23 893 915 893 915 0.99

Sequence Information

Coding Sequence
ATGATAGAAATGAGTAAAAAGCTTTCTGTGGATACAGATTGGACTTCAgggaacaaatatataaaaagttcatTGCATCAATTTTTTACTGTCAACAAGAATAATCATAACGTTGTATCTGTAATAAAAGAAGCagatttacaaaagaaaaagcgtaACTTTCAAGCCTTAAAGAATATGAAACATTCTGAAAATTCTgcgaataaagaagaaaaaataaattatgaagaaacttcttcaaatataataacagcaaaTCATAAATCACAACCTTTAAACTCCACGTCaactaagattattattaatcatcatGAAAATGCACATATACAATCGGAGATTGACAGTATACATGAAACATTATGCCGCAGAGGTCAAATTGATGTTATAGAAATGCCATTAGAacaaacatatttttataagtacTTTTTGGTTTATGAAGACTTACCATCGAAATTTGTAGTCTTACATGCTCTACACAGTAACACAGCAAAAGAAGTAGCAAATAAGTTACTAGATATATTAGCAATTATTGGGGCTCCTCAAGTTCTACAAAGTGGAAATGGACGAAATTTTGCTGAACAAATTGTCAGAGAATTACGTATTTTATggaaagattttattatattacatggaAATGTGTGCAAATGCGAAGAAGATAGTagagattttaaaaatttattaaaatgttgGTTAAACAAAAATCCTGGAAAAACATGGTATGAAGGCTTGAAATTTAtacaaatctttcaaaattcaaCATATCGTTGTCAAAATGGTAAAATACCATGTGATGTATTATTTGGACAAAATGTTCATCAAGAGtttcaaaaattaatcatcGCTAAAAATACAACAAATGATATGTGGACAGAAGAAGAATGGATAAATgttacattaaataaaaaacaaaataatactattacaTTTGATAATTTGACTCATATTTCtggaaatataatttcaataaatacaaCTGAtacagataaaaatgataattgCCATATTGAATACGATGATGTGTCATATAACAATCATAAAAACAATCATGAtgattcttttcaatttcataaaaattcaaataactTTAAATTTGTTAGTGTTAAAAGTGAAACATTTTTGGATAATTTACAAATGGAAGATTCAACATGTACAGAACCAAATATTGAAGAACGTAATCTTTGTCTAAATAACCAAAATTTAACATGTAAAATTTGTCATAAACAATACATGAAACTGGGACATTTGAAAAATCACGTAAAAACTCATATTAAGAAACGACAATTTGATTGCACATTGTGTAATAAAACATTCCAAATCttgaaattatatgaaaaacatATGCAACAATTTCATGAGAATtatcaacaaaataaaagtcaTACAGATtgcataaaaaatgataatagctGTAGTAAGTATACTGATATAAATGTTAGTAAACAAAGAAGTATGGAAACAGAGGAAATTCCAAAGATACATAAATCAATTATGAAATCTCATCAAAGTAGTAACATAGTACTAAACCATACGAATAAATGTGTTAGATCTATAAAAGAACCAAATTCTATCAATGGAAGACAATTTTccaggaagaaagaagaaaatagaatatcaAGATTGAATGGAAATCCAACATTAGAATGTTCATACTGTAAACAAAAATTCAGTTTTCCTAGTGTATTAAAAAGACACATGCGCTCTCATACAAATGAAAGACCTTATGTttgtaaaatatgtaataaaagttttaaacAATTAGGTCATCTTAGTCAACATTCATTGACACATAAAGATTATAGATCTTTTCAATGTGCAATATGTTGTGTTAAATTTGAATCTCTGGATTTACTTAAAACTCATTCTCAATCACATCAAGGTGAATCAATACTAAAgtcaaaagaaatttatcgtcTTTTCGAGTGTGATAACTGTAAAAAGGTTTTTACAACAAAGAGTGTGTTAGAACGTCATATATTTACTCATACACACGAGCGTCAATTTGGATGTAAAATATGTGGTAAACGATTTAAGCAAGCTGGTCATGTAAAATCTCATATGTTAGTTCATACTGGAGAGCGAAAATTTGAATGCACTATATGTTCAAAGAGATTTAGCTTATCAAATTCACTaaaaaaacatatgtatattcataatGGTGAAAAACCATATCAATGTGATGTGTGTGGAGCGAGATTtcttgagaaaagaaatcttaaTGGACATCTTATGACACATACAAACGAAAGGCCATTTTCTTGCAAAATATGTGGCAAACGATACACGTTAGCAGATACGCTACGTCGGCACGTCAGTGCTGCTCATGAAGATGGTCGAACGTATCAATGTGAAATTTGTGCAAAAATGTTTAAACAGCTTGCACATTTGTCTGTTCACAAGAAAGTACACAATGATGAACGTCCTTTCCAATGTCATCTTtgcgaaaaaaatttcaaacacAAAAATGTTCTCAAATCTCATTTAGCTATTCACGCAAATATTCGACCTTTTGAATGCGACATTTGTAAAGCAACATTTGTTAGAAAAACTAATTTACAAACACATATAGCATCAGCACATATGAATGAACGTCCATATGCTTGTACAATTTGTGGTAAACGTTTTAAGCAAATAAGCCATTTAAATGGTCACGTTGTTGTTCATAGTAATTCAATGCCTTATCAGTGTGATTTTTGCGATCGTCGCTGTAACAGATTGgataatttaaagaaacacATGCGTCTTCATACAAAAGACAAAGAATAG
Protein Sequence
MIEMSKKLSVDTDWTSGNKYIKSSLHQFFTVNKNNHNVVSVIKEADLQKKKRNFQALKNMKHSENSANKEEKINYEETSSNIITANHKSQPLNSTSTKIIINHHENAHIQSEIDSIHETLCRRGQIDVIEMPLEQTYFYKYFLVYEDLPSKFVVLHALHSNTAKEVANKLLDILAIIGAPQVLQSGNGRNFAEQIVRELRILWKDFIILHGNVCKCEEDSRDFKNLLKCWLNKNPGKTWYEGLKFIQIFQNSTYRCQNGKIPCDVLFGQNVHQEFQKLIIAKNTTNDMWTEEEWINVTLNKKQNNTITFDNLTHISGNIISINTTDTDKNDNCHIEYDDVSYNNHKNNHDDSFQFHKNSNNFKFVSVKSETFLDNLQMEDSTCTEPNIEERNLCLNNQNLTCKICHKQYMKLGHLKNHVKTHIKKRQFDCTLCNKTFQILKLYEKHMQQFHENYQQNKSHTDCIKNDNSCSKYTDINVSKQRSMETEEIPKIHKSIMKSHQSSNIVLNHTNKCVRSIKEPNSINGRQFSRKKEENRISRLNGNPTLECSYCKQKFSFPSVLKRHMRSHTNERPYVCKICNKSFKQLGHLSQHSLTHKDYRSFQCAICCVKFESLDLLKTHSQSHQGESILKSKEIYRLFECDNCKKVFTTKSVLERHIFTHTHERQFGCKICGKRFKQAGHVKSHMLVHTGERKFECTICSKRFSLSNSLKKHMYIHNGEKPYQCDVCGARFLEKRNLNGHLMTHTNERPFSCKICGKRYTLADTLRRHVSAAHEDGRTYQCEICAKMFKQLAHLSVHKKVHNDERPFQCHLCEKNFKHKNVLKSHLAIHANIRPFECDICKATFVRKTNLQTHIASAHMNERPYACTICGKRFKQISHLNGHVVVHSNSMPYQCDFCDRRCNRLDNLKKHMRLHTKDKE

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01090135;
90% Identity
iTF_01514953;
80% Identity
-