Vman008952.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- bab1
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000019.1:1096458-1141465[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 3.7e-13 7.6e-10 37.8 0.0 1 39 376 415 376 419 0.90 2 4 1.3e-12 2.7e-09 36.1 0.1 2 39 431 468 430 471 0.94 3 4 4.7e-19 9.8e-16 56.7 0.0 2 45 486 530 485 530 0.97 4 4 5.4e-19 1.1e-15 56.5 0.1 1 42 537 579 537 580 0.97
Sequence Information
- Coding Sequence
- ATGGTAAGCGGCGGCATGGCTGGGCAGCACTACTGCCTACGTTGGAACAACTACCAGTCCAACATGACATCCGTTTTCCATCAACTCCTGCAAAACGAGGCCTTCGTAGACGTCACCCTGGCATGTAACGAAGCTTCGTTGAAGGCACACAAAGTGGTCCTATCGGCCTGCAGTTCCTACTTTCAGAAGCTCCTACTCTCAAATCCATGTAAACATCCAACGATCATCATGCCGCAGGACGTATGCTTCAACGATCTCAAATTCATCATAGAGTTCGTCTACAGGGGCGAGATCGACGTTTCTCAAGCAGAACTTCAGTCGCTTTTGAAAACGGCCGACCAGCTCAAAATTAAGGGCCTCTGTGAGGTTCCTGAAAGCAAGGACGGACCACCATCAGTGAGCTTGAGCTCACCACCAAGAGAACCTGGTACACCAAGATTGAACTTTACCAGGTTGAAGAGACATCATCCAAGGTATAAGAGAGCGAGAACATCATTCGAGCCTCGTGCCACTGATTCAAGGCACTACGATAGATATAAAGAGGAGGAAACTAGCGAGAGTTACGGTCGCAATAATAAAGAGAATCACAGAGACTGGCAGGCCGAAGATGAAGAGTGTACGGAGGTGgcagcggcagcagcagcagtagttcTGGAAAGCTGCCAGCGCAACAgtaacaacagcagcaacggTAACGGtacaaacaacaacaacaataacgGGCTAGGTCATTACGGTCATCACCCAGATCCTGGAGAGGTAGATCTGCCTCCGGAAACACAGCCCACACCACCGAGCGCTACTTTGGTCGGTACCACTATTACTCATCTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATAGCGTGAAGATCAAGTTCGAAACTCTGCACACGATGGATTCTTCGGACACAATCGATATCGACAGTCACATGTCGGATAGAGCGAGCGTAAGCTCAAAAAATGCAGCGGATAGCGAcaatatgatgatgatcacgCCTGAACTTCTCGGACTTATGCCTTCTGGCAGTTCGATTCACTCGGACTCGGGTGAAAACAATTCGAGAGGTCATTCTGGACAATCGAGTTCACATCATCATGGTACCAAATCTTGGACTCAGGACGACATGGACGCCGCGTTGGAAGCCTTAAGGAATCACGACATGAGTCTTACGAAAGCATCTGcTACATTTGGTATCCCATCAACGACGCTCTGGCAAAGAGCTCATCGTTTAGGCATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGACGAGAGTTTAAATAATGCATTAGAAGCATTAAGAACAGGAACGATTTCGGCTAACAAAGCGTCGAAAGCTTTTGGTATACCTTCTAGTACTCTCTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCTTTTAACGCGAGTCCCACTACTTGGTCACCTGCCGATCTGGATCGTGCTTTAGAAGCAATAAGATCTGGTCAGACGTCTGTCCAGAGAGCCTCGACAGAATTTGGTATTCCCACGGGAACTCTCTATGGTAGGTGTAAAAGAGAAGGGATTGAACTTAGTAGAAGTAATCCTACACCTTGGAGTGAAGATGCTATGACTGAAGCTCTCGAAGCTGTCAGGCTAGGTCATATGAGCATCAATCAAGCAGCTATTCATTACAACTTACCCTATTCCTCGTTGTACGGACGTTTTAAAAGAGGCAAATACGAAGAACCAGTAGTCGGTGACTTATCACAGGATGGCACCAATCCACATTTTCATCAAAGTCCAACGCAGAATCACTCGTCCACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- MVSGGMAGQHYCLRWNNYQSNMTSVFHQLLQNEAFVDVTLACNEASLKAHKVVLSACSSYFQKLLLSNPCKHPTIIMPQDVCFNDLKFIIEFVYRGEIDVSQAELQSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGTPRLNFTRLKRHHPRYKRARTSFEPRATDSRHYDRYKEEETSESYGRNNKENHRDWQAEDEECTEVAAAAAAVVLESCQRNSNNSSNGNGTNNNNNNGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGTKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNPHFHQSPTQNHSSTIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- iTF_01512912;