Vman008111.1
Basic Information
- Insect
- Vespa mandarinia
- Gene Symbol
- retn
- Assembly
- GCA_014083535.1
- Location
- JACHAV010000025.1:546603-741080[-]
Transcription Factor Domain
- TF Family
- ARID
- Domain
- ARID domain
- PFAM
- PF01388
- TF Group
- Helix-turn-helix
- Description
- This domain is know as ARID for AT-Rich Interaction Domain [2], and also known as the BRIGHT domain [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 8 1.2e+04 -4.1 0.1 70 82 258 271 248 271 0.67 2 2 7e-26 1.1e-22 79.7 0.0 2 89 278 363 277 363 0.96
Sequence Information
- Coding Sequence
- ATGGAGTTGAGCGACGATTATCAGGACATGGTTAATCCAGGTGGTGGCGTTTCTATGGGGAATATACAACCTATGGGACATCATCGGCATACACCTGAAAGTCCTTTGTCCCATCAAGAAGAAGATTTATCAGATCCCGATTTACAGGATGAAGAAAGTGGAGAAGAGTTACCACAGCAGCCACACGCTGGACATAGTACTACACATCAGAATCCATCGGAACCACCGTCTATATCGACCAACACAACTTCCACACCTTTGACAAATCTCAACACACTCATGAATAGCCATCATCCACATTTTCTAGCCAAGTTAAAGATGGAggcCGACGTCGATATATTGAACAACAAAAGTGGATTGGAGGCATTACAAGCGGCAATGGGTAGCGGTGGTTTCAGTTTACCATTTACGTTTCCACCAACATTTTTACCACCCCAACACCATGGACAAAACAATCACGCGCAAAGTGGATTGGTACCATCTACGTCATCGGCGGCCGCAGCCGCTGCGGCCGTAGTCGCATTGGGATCTGGATTAGGAGCAGGATTAGGACCACCAGGACTAAACACGGCGACCGGAAGCAACATTAATCAAGTGGCTACATCATCGTCTAGCTCGCACTCGAGCGAATCATCGCATTGCAGTGGAAAAACTGGAGGAGAAGCACGGGATCATTCTGCTGGTAATAGTCATTCCCACAACGCTaacagcaacaataataacaacaataacaacaacaacaataacaattcaaCATCTAATCATCAACAAACTAGTTGGAGCTTCGAGGAGCAGTTCAAACAGtTGTACGAGATTAATGATGATccaaaacgaaaagaatttctCGACGATCTCTTCAGTTACATGCAAAAACGTGGAACACCGATCAATCGATTACCGATTATGGCAAAATCAGTATTGGATCTTTACGAACTATATAATCTTGTGATTGCTCGTGGCGGTCTGGTCGACGTTATAAACAAAAAGCTTTGGCAGGAAATCATCAAGGGTCTCCACCTGCCTTCTAGCATAACTTCCGCCGCATTTACTCTTCGCACTCAATATATGAAATATCTCTATCCATATGAGTGCGAAAAACGACGATTATCGACTCCTGCGGAACTTCAGGCAGCAATCGACGGTAATCGTCGTGAAGGCCGCAGGAGCAGTTATGGGACATATGCTGCTGGTGGGCCAGGTAGCGAAGGCTTGGTCCAAAGAAATCCACCAAACTCGTTGGCGATGCGGGCCCAaatgtcaccattatcattggTGACAGCAGTCGCGGGACATCACGGAGCTGGACAGTCATTGGTTAACGGACATTCAGCTCACACAAGTATGtctcatcaccatcaccatccgCATCATGCTCAACATCCCCAAGGGCCATTGAGCCAACCGCCAACCTTATCTATGACAAATTTGGCGCCGTCCGAATTTGAAGCGCGTATGGTGGAAtacgtaaaattattaaacaaagaaTTAAGAAATGCAGGAGCAGGCACTCCTCCACCAATGATAAATCGTCAAGGAAGTTCAACACCACCTTCGTCGACCCCACCTAAAGATACTAATACGAGTGGTTATGAGATGTCACGGTTAACCCTATGGGGAAtgtatggtaataataacccCATCTATTCGGCAGTAATACACCAACCACCATTATCACCACAAACGTCACAATCTCCGTTACAACATATATCTAGCCCTGAACCTCAAAGGGAAGCATTAGATCTTGGACTTAGgtcGTCACCCGCATGTTCCTCACCGTCTGGACCAAGTCCACTTTCATCTGGCAGCAGTTTTCATGTTAGGAAGGATAATGAACAAGGACCACCAGCCGCTAAAAGATTACTATGCGAAGAGGATAACCCACCTGATAAAAATCCTTCTATTACAGGAACCCATATCAAGATTTGCAATCGAGATGGGAAAAATGGTGAAAATTCCCTAGTAGTCAGCGTAGAACTGAACGGTGTCACATATCAAGGAGTACTTTTTGCCCAAACGGATTCGAAGAATACcacatcgtcatcatcatcatcaacaacgACGTTGACGCATAATGAAAACGGAAAAACATCACGGAGCATTGCATCGTGA
- Protein Sequence
- MELSDDYQDMVNPGGGVSMGNIQPMGHHRHTPESPLSHQEEDLSDPDLQDEESGEELPQQPHAGHSTTHQNPSEPPSISTNTTSTPLTNLNTLMNSHHPHFLAKLKMEADVDILNNKSGLEALQAAMGSGGFSLPFTFPPTFLPPQHHGQNNHAQSGLVPSTSSAAAAAAAVVALGSGLGAGLGPPGLNTATGSNINQVATSSSSSHSSESSHCSGKTGGEARDHSAGNSHSHNANSNNNNNNNNNNNNNSTSNHQQTSWSFEEQFKQLYEINDDPKRKEFLDDLFSYMQKRGTPINRLPIMAKSVLDLYELYNLVIARGGLVDVINKKLWQEIIKGLHLPSSITSAAFTLRTQYMKYLYPYECEKRRLSTPAELQAAIDGNRREGRRSSYGTYAAGGPGSEGLVQRNPPNSLAMRAQMSPLSLVTAVAGHHGAGQSLVNGHSAHTSMSHHHHHPHHAQHPQGPLSQPPTLSMTNLAPSEFEARMVEYVKLLNKELRNAGAGTPPPMINRQGSSTPPSSTPPKDTNTSGYEMSRLTLWGMYGNNNPIYSAVIHQPPLSPQTSQSPLQHISSPEPQREALDLGLRSSPACSSPSGPSPLSSGSSFHVRKDNEQGPPAAKRLLCEEDNPPDKNPSITGTHIKICNRDGKNGENSLVVSVELNGVTYQGVLFAQTDSKNTTSSSSSSTTTLTHNENGKTSRSIAS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01514618;
- 90% Identity
- iTF_01514618;
- 80% Identity
- -