Vcra012481.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- RCBTB1
- Assembly
- GCA_025728115.1
- Location
- JAITYU010016407.1:13811-16390[-]
Transcription Factor Domain
- TF Family
- BTB
- Domain
- zf-C2H2|ZBTB
- PFAM
- PF00651
- TF Group
- Zinc-Coordinating Group
- Description
- The BTB (for BR-C, ttk and bab) [6] or POZ (for Pox virus and Zinc finger) [1] domain is present near the N-terminus of a fraction of zinc finger (Pfam:PF00096) proteins and in proteins that contain the Pfam:PF01344 motif such as Kelch and a family of pox virus proteins. The BTB/POZ domain mediates homomeric dimerisation and in some instances heteromeric dimerisation [1]. The structure of the dimerised PLZF BTB/POZ domain has been solved and consists of a tightly intertwined homodimer. The central scaffolding of the protein is made up of a cluster of alpha-helices flanked by short beta-sheets at both the top and bottom of the molecule [2]. POZ domains from several zinc finger proteins have been shown to mediate transcriptional repression and to interact with components of histone deacetylase co-repressor complexes including N-CoR and SMRT [5, 3, 4]. The POZ or BTB domain is also known as BR-C/Ttk or ZiN.
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.00059 0.13 12.2 0.1 9 38 360 388 354 389 0.87 2 3 7.5e-10 1.6e-07 31.1 0.4 54 108 387 441 383 443 0.93 3 3 0.38 82 3.1 0.0 82 108 447 473 442 475 0.88
Sequence Information
- Coding Sequence
- ATGTCTTCCTTCGATTTAAAGAATTGGCCAATTTTTAGCTTATTAGAATCTAAATTCATTGCCAGTATTCAAATGGTCGTAGTATATGGTAACTTAGGTAATGAAGCTTTAATTGTAACAAAGGATGATATGGTATACGGTTTGGGATGCAACATTACTGGTTGTCTTGGAACAGGAGACGCGCATAGTACTCTTCATCCTAAAAAAGTAGAAGCCCTTTGTGAAAAGGGTATAAAAACTTTTGCTTATGGCAGTGGTCCTCATGTATTGGCACTTACAGATAAAGGAGAGGTATATTCTTGGGGACATAATGGATTCTGTGAATTGGGTAATGGATCATCGAATCATGGATTGACTCCAACTCCTGTAGGAATGCCTTTGAGCGAAAAAGTTGTGATAGACATTGCTTGTGGAAGTCATCATTCTCTTGCTCTTACGGATGAAGGAGAGGTTTATGCGTGGGGACAAAACAATTGTGGACAAGTAGGCAGTGGTATAAGTTCTAATCAAGGTGCACCACGAAAAATTAATTCCTCATTAACCGGTAAAAAAGTTGTGTCTATCACTTGCGGACAGACTTATAGTATGGCGGTTACAAATAACGGTGAAATTTATGGCTGGGGTCATAATGGGGTCGGACAATTAGGAAATGGAACTTATACTAATCAATTGAATCCATGTAAAGTTACAGGTTTAATAGGAATAGTTATAGAAAAAGTTGCTTGCGGTTATGCGCATACATTAGCGTTAAGCGACGAAGGTGTACTTTATGTCTGGGGAAGTAATAGTTATGGTCAATTAGGTCTTGGCAATAAAACAAATGCTTGTGTTCCTATGAAGTTATCTGTACCAGAAATGGGACGAGTATCTGATATAGCAGCATTGCATTATAATCATATAAGTGTTGCAATTGGAGAAGGACATAAAGTATTTATGTGGGGTCAATGTCGTGGACAAAGCATTACGGTACCAACACCAACTCTATTAGCACATTTGCATGATGCTCTAGCCTGTTATGCATCTCCAAGCGTAATGCATCGCCCACTATTTCTTTATGCAGCAGAAGAGATGAATATTACAACAAGTGACTTGATAATACAGGTGCAAGCTAGACCTATCTATGTTCATAAGGCTGTGTTAAAAATACGATGTCACGTTCTCCATCATGATCAATTTTCTCATGACGTTTTTAAGTCATTTTTAAAATATCTGTATACAGATGAAGTTGATCTTCCTCCTGAAAATGCATTAGAATTATTGGACTTAGCAAATGTATATTGTGAAACGCAATTGAAAAGACGATGCGTTCAAATAATTAAACAAGGAATAACTGTTCTCAATGTGGCTTATCTATATAGAACAGCGATGAATTATAATATTCAGGAGTTAGAAGAGTTTTGTTTTAAATTTGCATTAAATCATATGACTGCTGTAATACAGACGTCTAATTTTGGTACATTGGACGAAGAGACAGTAAAAACATTTATAATTAAAGCCGCCCGAGCAGGAGCTTTTAAAACATGA
- Protein Sequence
- MSSFDLKNWPIFSLLESKFIASIQMVVVYGNLGNEALIVTKDDMVYGLGCNITGCLGTGDAHSTLHPKKVEALCEKGIKTFAYGSGPHVLALTDKGEVYSWGHNGFCELGNGSSNHGLTPTPVGMPLSEKVVIDIACGSHHSLALTDEGEVYAWGQNNCGQVGSGISSNQGAPRKINSSLTGKKVVSITCGQTYSMAVTNNGEIYGWGHNGVGQLGNGTYTNQLNPCKVTGLIGIVIEKVACGYAHTLALSDEGVLYVWGSNSYGQLGLGNKTNACVPMKLSVPEMGRVSDIAALHYNHISVAIGEGHKVFMWGQCRGQSITVPTPTLLAHLHDALACYASPSVMHRPLFLYAAEEMNITTSDLIIQVQARPIYVHKAVLKIRCHVLHHDQFSHDVFKSFLKYLYTDEVDLPPENALELLDLANVYCETQLKRRCVQIIKQGITVLNVAYLYRTAMNYNIQELEEFCFKFALNHMTAVIQTSNFGTLDEETVKTFIIKAARAGAFKT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01513581; iTF_01514919; iTF_01234445; iTF_01232494; iTF_01090096; iTF_01514256; iTF_01233105; iTF_01235127; iTF_01512926; iTF_01233759;
- 90% Identity
- -
- 80% Identity
- -