Vcra010429.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Vespa crabro
Gene Symbol
Hr39
Assembly
GCA_025728115.1
Location
JAITYU010016741.1:2447-5892[+]

Transcription Factor Domain

TF Family
SF-like
Domain
zf-C4|SF-like
PFAM
AnimalTFDB
TF Group
Zinc-Coordinating Group
Description
The ligand binding domain of nuclear receptor steroidogenic factor 1 (SF-1): SF-1, a member of the nuclear hormone receptor superfamily, is an essential regulator of endocrine development and function and is considered a master regulator of reproduction. Most nuclear receptors function as homodimer or heterodimers, however SF-1 binds to its target genes as a monomer, recognizing the variations of the DNA sequence motif, T/CCA AGGTCA. SF-1 functions cooperatively with other transcription factors to modulate gene expression. Phospholipids have been determined as potential ligands of SF-1. Like other members of the nuclear receptor (NR) superfamily of ligand-activated transcription factors, SF-1 has a central well conserved DNA binding domain (DBD), a variable N-terminal domain, a flexible hinge and a C-terminal ligand binding domain (LBD). [1, 8, 3, 11, 6, 5, 12, 10, 9, 2, 4, 7]
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 5 2 1.4e+04 -6.6 6.2 131 157 64 88 25 115 0.51
2 5 2 1.4e+04 -6.7 9.2 85 163 304 386 219 431 0.56
3 5 2 1.4e+04 -7.5 9.6 72 152 423 508 393 532 0.46
4 5 2e-08 0.00014 21.1 0.2 1 24 599 622 599 670 0.74
5 5 5.6e-70 4e-66 223.8 0.0 202 408 795 996 730 996 0.93

Sequence Information

Coding Sequence
ATGTCGGAGCAAAACGGGCCTGGCGATGGCCCGGGACCTGGTCCAGGCTGGTGGCCGTCAACACAATCCTGGAAGTCGTCTGGTTCCGTCGGATCAAATTCGTCGTCGTCTTCTACCTCCGGTACGAGCGGCGGCACCACTTCCGTTTCTGCCTCCTGCGCCACCGCCGCCGCCACCGCACCCACCACCGGATCGGCCTCGTCAGTCTCACCGACGTCCTCCTCCACCTGCTGTTCCTCCTCATCCATCGGCAATTCTACGATGACTACTACTCGTTCTACAGAGGCAGGGAAGAACGTTTCCGTAACTGCGATCAATGTCCCACCTACTCATGAAATGCATGACGGCAAAGGCATCTGTAAGTATTTAGGAGGTCAAAATGGCGTGACGGTGTCCGTAGTTTCAAATTGCGGCTCGGTACTCGGCTGTGCAAGTAGTACCAGCAGCGTGGGCTCGCATGGCATCGGTATCGGTATTCTCGGTTCAAATGCCGCGGATATCGACGACGCGGACGACAGCGACGGTGAAATAAGCAAGATCGACTTCCGTGGTGTCAATCTGCGAACCAAGAAGAAACGAGATATCTCCGTAAATCAGAGCGGTGAGAAAATCGGCGATTGCGATGGCGAAGGTGAAAGCGGAGCTTGCGACGGTAACGATACGTCCCAACAGCAACAACCAGAGAGACCTATGTCATGGGAAGGAGAGCTCTCCGATCAAGAGATGTCTTCGAACACCCTCACTAATCAGGATCAACATGAGGAAACGTCAATGGAGGGTGTTCAGGTTTGCGGTGCCAGTCCCGGACCCGTAGAGCAAAAGTTTCCAATAAAGCCAGAGCCAGACTTTCGGTCGAGTCCAGGATACACGCTTGGCTCCTTTCATGATGGAAATTTGTCTTTAAGTCACAACCAACAATTACAACAACAACGTGGTATCGAAAATCTTGAACAAACGCAACAGAGCGACCTACCTCTTCTCGTGGGAAAATTACTTGGTGGGTACAACAGTTCCACTCCAAATCACAGTCCTGTTCTTAATCCAAGACATCATTTGACCAAGCACAGTCACACGCGATCGCAGGTACCATCACCGGATTCCGCGATTCATTCTGCCTACAGTGTCTTCAGTTCTCCAACCCAAAGTCCTCATGCTGCAAGACACTCCGCCTTAGGAGCAGGAAGCCCAATTCCTTCTTCCTCGCTCTCCTTATCTCGACATAGCTTCAATAATTCGACGTCCTCCTTATCACTCTCCCTCTCTCATTCGCTCTCGCGTAATAATTCAGACGCTTCGAGCAGCTGTTACAGTTATGGCTCTTTGAGTCCACCTACGCATTCTCCCGTCCAACAGCCTCGACATCCGCACGCTCACTCGCAACATCAGCATCAGCAAGTAGCACAAGGTAGTCCTTTGCATCTTCCAACGGCTGCTGCTTCGGCCGTGAGCGCGCACCATTATTCCTCTTCCGCACCAGGATCAGAGCTTTCATCGGATGGACATCCTGGAACGGAAGATCAAGAAGACTGTAGAATACCTGCTGCACCATCGGGTATCTCCACACGACAGCAGTTAATTAATAGCCCCTGTCCGATCTGCGGTGATAAGATTAGTGGATTTCATTATGGTATCTTCTCGTGTGAATCGTGCAAGGGCTTCTTCAAGAGGACCGTCCAGAACCGCAAAAACTATGTGTGCCTTAGGGGTGCAGGTTGTCCCGTTACCGTTGCCACAAGAAAGAAATGCCCTGCTTGTCGATTTGACAAATGCCTCAATATGGGAATGAAACTCGAAGCGATCAGAGAGGATCGTACCAGAGGTGGTAGGAGCACTTATCAGTGTACATATACTTTACCGGCAAATCTCGTCGGTAGTCCTGCGAACAATATGGCGGCAGGTGATAAAATGAATGCTGCTGGTAACTGCAGTCCTGCACCGCCCGGTAGCGAACATCATTATTCCGTTAGACATCATTCGAATCATTCGTATAAAGTACAAGTAGTACCACAGCTTTTGCAGGACATCATGGATGTGGAACATCTTTGGCATTACAATGACAGTGATCGTATAACTGGTATTCAATCTGGTGTGATAACTTCGGGTGGAACTAGGAGCGCTCCTGGCAGTGACATGTTGTTAGGAAGCGGAAACGGTGGAGGAGCAGGTGCTCCTGCCGGTCGAAGTGGATCCGCTACCAATGGGTCTGGTACCGATTGTCCCACCAACGGACATGGTAGTAACAATATTAATAGCAGAAGGGAAGATAACACAACAAGACCCTGTTCAACAGGCTCAGCTTCCACCGGTAGCCACGAACAATTGTCCGCTAACACTGGTAACGTTGGCAACTGTAATTCCCAAATGTGCGGAAATTCTAATGGCAATCCATCGCAACATCCGGACTTTCTTTCGAATCTTTGCAATATTGCCGATCATCGTTTATATAAGATAGTTAAATGGTGTAAGAGTTTGCCACTTTTCAAAAATATTTCAATCGATGATCAGATCTGTCTACTGATCAATTCATGGTGCGAGTTGCTGCTTTTCTCTTGTTGTTTCCGTAGTATGAGCACTCCTGGTGAAATAAGGGTATCTCTCGGCAAGTCGATCACGTTAGAGCAAGCAAGACAACTCGGTTTAGCGACTTGCATCGAGAGGATGCTCGCTTTCACCAATAATTTGAGAAGGCTAAGGGTGGATCAATACGAATACGTAGCGATGAAGGTTATAGTGTTACTTACGTCCGACACCAGTGAATTAAAAGAACCCGAGAAAGTTAGAGCTTCTCAAGAAAAAGCTTTACAGGCACTTCAACAATATACTATTGCCAGGTATCCAGAAATGCCTGCCAAATTTGGTGAACTATTATTGAGGATTCCAGATTTACAAAGAACGTGTCAGGCAGGCAAGGAATTATTGAGTGCAAAACGTGCGGAAGGAGAAGGCAGCTCGTTCAACCTATTAATGGAATTACTGAGAGGTGATCATTAA
Protein Sequence
MSEQNGPGDGPGPGPGWWPSTQSWKSSGSVGSNSSSSSTSGTSGGTTSVSASCATAAATAPTTGSASSVSPTSSSTCCSSSSIGNSTMTTTRSTEAGKNVSVTAINVPPTHEMHDGKGICKYLGGQNGVTVSVVSNCGSVLGCASSTSSVGSHGIGIGILGSNAADIDDADDSDGEISKIDFRGVNLRTKKKRDISVNQSGEKIGDCDGEGESGACDGNDTSQQQQPERPMSWEGELSDQEMSSNTLTNQDQHEETSMEGVQVCGASPGPVEQKFPIKPEPDFRSSPGYTLGSFHDGNLSLSHNQQLQQQRGIENLEQTQQSDLPLLVGKLLGGYNSSTPNHSPVLNPRHHLTKHSHTRSQVPSPDSAIHSAYSVFSSPTQSPHAARHSALGAGSPIPSSSLSLSRHSFNNSTSSLSLSLSHSLSRNNSDASSSCYSYGSLSPPTHSPVQQPRHPHAHSQHQHQQVAQGSPLHLPTAAASAVSAHHYSSSAPGSELSSDGHPGTEDQEDCRIPAAPSGISTRQQLINSPCPICGDKISGFHYGIFSCESCKGFFKRTVQNRKNYVCLRGAGCPVTVATRKKCPACRFDKCLNMGMKLEAIREDRTRGGRSTYQCTYTLPANLVGSPANNMAAGDKMNAAGNCSPAPPGSEHHYSVRHHSNHSYKVQVVPQLLQDIMDVEHLWHYNDSDRITGIQSGVITSGGTRSAPGSDMLLGSGNGGGAGAPAGRSGSATNGSGTDCPTNGHGSNNINSRREDNTTRPCSTGSASTGSHEQLSANTGNVGNCNSQMCGNSNGNPSQHPDFLSNLCNIADHRLYKIVKWCKSLPLFKNISIDDQICLLINSWCELLLFSCCFRSMSTPGEIRVSLGKSITLEQARQLGLATCIERMLAFTNNLRRLRVDQYEYVAMKVIVLLTSDTSELKEPEKVRASQEKALQALQQYTIARYPEMPAKFGELLLRIPDLQRTCQAGKELLSAKRAEGEGSSFNLLMELLRGDH

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01513512;
90% Identity
iTF_01234404;
80% Identity
iTF_01512239;