Vcra012303.1
Basic Information
- Insect
- Vespa crabro
- Gene Symbol
- -
- Assembly
- GCA_025728115.1
- Location
- JAITYU010018494.1:117300-120764[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 4 5.5e-13 7.3e-10 38.1 0.0 1 39 289 328 289 332 0.90 2 4 2e-12 2.6e-09 36.3 0.1 2 39 344 381 343 384 0.94 3 4 7.1e-19 9.4e-16 57.0 0.0 2 45 399 443 398 443 0.97 4 4 8.2e-19 1.1e-15 56.8 0.1 1 42 450 492 450 493 0.97
Sequence Information
- Coding Sequence
- ATGAATATAATGAAAATTAGTAATCGTAATTCGGGGTCGCTTTTGAAAACGGCCGACCAGCTCAAAATTAAGGGCCTCTGTGAGGTTCCTGAAAGCAAGGACGGACCACCATCAGTGAGCTTGAGCTCACCACCAAGAGAACCTGGTACACCAAGATTGAACTTTACCAGGTTGAAGAGACATCATCCAAGGTATAAGAGAGCGAGAACATCATTCGAGCCTCGTGCCACTGATTCAAGGCACTACGATAGATATAAAGAGGAGGAAACTAGCGAGAGTTACGGTCGCAATAATAAAGAGAATCACAGAGACTGGCAGGCCGAAGATGAAGAGTGTACGGAGGTGGCAGCGGCAGCAGCAGCAGTAGTTCTGGAAAGCTGCCAGCGCAACAGTAACAACAGCAGCAACGGTAACGGTACAAACAACAACAACAATAACGGTGACATGTTCTGTCACACAGGGCTAGGTCATTACGGTCATCACCCAGATCCTGGAGAGGTAGATCTGCCTCCGGAAACACAGCCCACACCACCGAGCGCTACTTTGGTCGGTACCACTATTACTCATCTGCGAGACTCTGATCATCATTCGACTGAGATACAAAATTGCGATAGCGTGAAGATCAAGTTCGAAACTCTGCACACGATGGATTCTTCGGACACGATCGATATCGACAGTCACATGTCGGATAGAGCGAGCGTAAGCTCAAAAAATGCAGCGGATAGCGACAATATGATGATGATCACGCCTGAACTTCTCGGACTTATGCCTTCTGGCAGTTCGATTCACTCGGACTCGGGTGAAAACAATTCGAGAGGTCATTCTGGACAATCGAGTTCACATCATCATGGTACCAAATCTTGGACTCAGGACGACATGGACGCCGCGTTGGAAGCTTTAAGGAATCACGACATGAGTCTTACGAAAGCATCTGCTACATTTGGTATCCCATCAACGACGCTCTGGCAAAGAGCTCATCGTTTAGGCATCGACACGCCAAAAAAGGACGGACCTACGAAATCCTGGAGCGACGAGAGTTTAAATAATGCATTAGAAGCATTAAGAACAGGAACGATCTCGGCTAACAAAGCGTCGAAAGCTTTTGGTATACCTTCCAGTACTCTCTACAAAATAGCAAGAAGAGAGGGTATTAGATTAGCTGCACCTTTTAACGCGAGCCCCACTACTTGGTCACCTGCCGATTTGGATCGTGCTTTAGAAGCAATAAGATCTGGTCAGACGTCTGTCCAGAGAGCCTCGACAGAATTTGGTATTCCCACGGGAACTCTCTATGGTAGGTGTAAAAGAGAAGGGATTGAACTTAGTAGAAGTAATCCTACACCTTGGAGCGAAGATGCTATGACTGAAGCTCTCGAAGCTGTCAGGCTAGGTCATATGAGCATCAATCAAGCAGCTATTCATTACAACTTACCCTATTCCTCGTTGTACGGACGTTTTAAAAGAGGCAAATACGAAGAACCTGTAGTCGGTGACTTATCACAGGACGGCACCAATCCACATTTTCATCAAAGTCCAACGCAGAATCACTCGTCCACGATTCCCGATCAAATGTCTTATCAGGGTAGCTGA
- Protein Sequence
- MNIMKISNRNSGSLLKTADQLKIKGLCEVPESKDGPPSVSLSSPPREPGTPRLNFTRLKRHHPRYKRARTSFEPRATDSRHYDRYKEEETSESYGRNNKENHRDWQAEDEECTEVAAAAAAVVLESCQRNSNNSSNGNGTNNNNNNGDMFCHTGLGHYGHHPDPGEVDLPPETQPTPPSATLVGTTITHLRDSDHHSTEIQNCDSVKIKFETLHTMDSSDTIDIDSHMSDRASVSSKNAADSDNMMMITPELLGLMPSGSSIHSDSGENNSRGHSGQSSSHHHGTKSWTQDDMDAALEALRNHDMSLTKASATFGIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLNNALEALRTGTISANKASKAFGIPSSTLYKIARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTEFGIPTGTLYGRCKREGIELSRSNPTPWSEDAMTEALEAVRLGHMSINQAAIHYNLPYSSLYGRFKRGKYEEPVVGDLSQDGTNPHFHQSPTQNHSSTIPDQMSYQGS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00141914;
- 90% Identity
- iTF_00391429;
- 80% Identity
- -