Vnig017818.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000074.1:51383-53947[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 1.2 2.2e+03 -0.6 0.0 21 34 160 173 152 191 0.66 2 7 0.0067 12 6.7 0.1 26 49 276 299 270 303 0.86 3 7 0.094 1.7e+02 3.0 0.0 21 48 299 325 295 329 0.89 4 7 0.0053 9.4 7.0 0.1 17 51 350 385 344 387 0.85 5 7 0.57 1e+03 0.5 0.1 23 43 386 406 384 412 0.87 6 7 0.00012 0.21 12.3 0.1 21 52 412 443 406 445 0.87 7 7 1.1 1.9e+03 -0.4 0.0 21 44 440 463 438 468 0.82
Sequence Information
- Coding Sequence
- ATGGTTGACAATATACCTATGAAGAATATTTGTCGCGTCTGTTTAGTTGAAAACGGAGAAATGATATCAATATTTTCTTTGGGAAAGCTAGGAAATACTGAATTGCAGATAGCAGACATTATTATGGCGTGTGCTGCGGTACAgataagtGAAGGAGACGGTTTGCCAAGTGAGATTTGTGCAGCATGTAGCAGAGAAGTAAACatcataaatacatttaaacaaAAGTGCGAAAAATCAGATGTTTTTCTTCGAAGTAGATTTGAAGTAAGCAGATTGCTTTTACCCGAAAACGAATATCCTGTGGCGGAACTCAAAGAAGAAATCGATATAAAGCCGGACATATATCCATATTCAAATCACGTGGATCAAGATGTTTCAGAGTCCGAAAACATAAGCCCTTTAAACGAAAATGAATCTTTGAATGACGATTTGAACTCCGATAATGATTCAGACGTACCTCTAAACAATATTAGTTCATCAAAAGTGTCTAAATGTCCTCTTTGTGAAAAAAGTCTGGTCAAAAGATAtgttaataaacatttaaaaaatcatactaACGGTAAAGAATTCGAATGTGAATTTTGTTTCAAAGGTTTTTCAAAAAGGGAATCATTAATACGCCACGAATCTTTGCATTCAATAGATTTCACGTATAAAACAGAAGAAAGTCGAATTAAAAAAACGTTCTTTAAATCCAATCATTTAAACTATCATATGAAAACTCACGAACAAGTATATTCATGTGAACAATGCCATAAAAGTTTTTGTACAGAAACGCAGCTAACCAAACATTTAAATAGTCACGCCACCGTGATAAAACATTCTTGTAATATATGCAATAAGGCTTTCAAACAGATTAGTAACTTAAAAAGTCATTTAAGgaCTCACAACAAAGAAAAACCGTTCCTATGTTCGACTTGCGGCAAAGGTTTTACTCAAGTAGGAAATTTACAAGAGCATATGTTACGCCACACAGGCATAAAAGCTCACATATGCAATGTTTGCGGCAATGGATTCGTCAGCAAAGGTGAATTGGTATCGCATTCGAGGACTCATTCGGGCATTCGGCCTTATATTTGCGACATTTGCAGCGCCGATTTCCCAAGACCTGATTCATTACGAAAACATAAAGAGGGCGTACATTTGGGGAAACGCCCCTATGAATGCGACGTATGCAAAGCGACTTTTTCACGCCCACATCATTTAGTCAGACACAAACGAACACACACTGGGGAGAAACCGTACACTTGTAAATTTTGTGCAAAAAAGTTTACACAAAGTAAAAATCTCGTTGAACATATTAGAATACATACCGGTGAAAAACCGTACGTTTGCGATGTTTGTGGAAAGGGTTTCACTCAAGGATCTCCGCTTAAAACccataaaaaaattcatatgaataaaaattcgctctcataa
- Protein Sequence
- MVDNIPMKNICRVCLVENGEMISIFSLGKLGNTELQIADIIMACAAVQISEGDGLPSEICAACSREVNIINTFKQKCEKSDVFLRSRFEVSRLLLPENEYPVAELKEEIDIKPDIYPYSNHVDQDVSESENISPLNENESLNDDLNSDNDSDVPLNNISSSKVSKCPLCEKSLVKRYVNKHLKNHTNGKEFECEFCFKGFSKRESLIRHESLHSIDFTYKTEESRIKKTFFKSNHLNYHMKTHEQVYSCEQCHKSFCTETQLTKHLNSHATVIKHSCNICNKAFKQISNLKSHLRTHNKEKPFLCSTCGKGFTQVGNLQEHMLRHTGIKAHICNVCGNGFVSKGELVSHSRTHSGIRPYICDICSADFPRPDSLRKHKEGVHLGKRPYECDVCKATFSRPHHLVRHKRTHTGEKPYTCKFCAKKFTQSKNLVEHIRIHTGEKPYVCDVCGKGFTQGSPLKTHKKIHMNKNSLS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511266;
- 90% Identity
- iTF_01511266;
- 80% Identity
- iTF_01511266;