Vnig006763.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000014.1:3049199-3050422[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 8 0.45 8e+02 0.8 0.1 23 44 112 133 105 139 0.83 2 8 0.11 2e+02 2.7 1.0 25 48 141 163 130 166 0.88 3 8 0.013 23 5.7 0.1 24 46 209 231 204 239 0.84 4 8 0.52 9.3e+02 0.6 0.0 21 43 262 284 254 287 0.77 5 8 0.15 2.6e+02 2.4 0.4 21 43 290 312 282 318 0.89 6 8 3e-05 0.054 14.2 0.0 21 45 322 346 318 352 0.90 7 8 0.086 1.5e+02 3.1 0.0 22 43 351 372 348 377 0.87 8 8 0.015 27 5.5 0.0 21 44 378 401 375 405 0.88
Sequence Information
- Coding Sequence
- atgaaaagaaaaaaaataccgaaaactgAACCAGAAGCGGTTGATATAATCGAGGAAAATACTGAAGAAACTGAACACATCGAAATTGCACCAAATATAAATCTCTACCTGAACGAAATCGAGTCAACGAATAaacctattaaaataaaaaaagcaaataaaaaagcTAGCAAAGGAGACGTATCATTCAACAATGAGTATTATCGATATTTGGAAACCGCGACTGAAGATAAGAAAGAATCAGTAGCCGGTAATTCAAACAATAACATCAAATTAGAACCGATACAAACACAGCCACTCGAGGAtcctttaaaaataaacgaagATGATTCGAAACCCCACCGTTGCGACATTTGTCCGAGAACATTTGtaacagaaaataatttaaaaaatcataaattgctACATGCTAGAACTGACTGTACCTGTAAAATTTGTTCAAAACGGTTCAACACACCGTCGGCTTTAAGACGACACGAATTGACGCATGACAAAAACCGCAAGATCGAAAAACGTACGCCAGCCAGTAACGAAAATAGCGCATTGAAATGTTCATATTGCAGTCGTACGTCCAAAAACGAAAGACTAGCCCAGTTGCACGAACTAATTCACACTACGACAGGCCCTTACGAGTGCAAAGTCTGCTCCAAAACATTCCCGCAGCTCGGGAATTTACGGCGCCACGGGGCTGTCCATTCGGGATATAAACCGCACGCGTGCACTTTGTGTCCGAAAGCGTTTTCTGAGCGCAGTCATCTAAAAAGTCACATAAGAACGCATACAGGGGAAAGGCCTTTCATGTGCGACATCTGTTCAAAATCGTTCGCCGATATGAGCACGCTCAAAAAGCACGCATTTACGCACGCCACGGACAGACCGTACGTCTGCGATGTATGCTCGAAAAGTTTCTGTCAGGAGTCGCGGCTAAAACGTCACAGGGCGTCGCACGACGTAGTGGCCACTGGAGAAAAACCGTTTACGTGCGATATTTGCTTTAACACGTACATGAAAGTCGATTCGCTCAGGCGACATTTGCTCATTCATACCGGAGAGAAAAAGTATACATGTGACGTTTGTATGAAATCATTTACTCAGAGTGGCACGCTGAAAGTACATAAATTGATTCATTCTGGAGAGCGACCGCATGTTTGCGACATATGCTTCAAGACATTCACCCAAGTTGGAACTATGAAAAAACATAGGGATGCGCATAAGACGAGCTAA
- Protein Sequence
- MKRKKIPKTEPEAVDIIEENTEETEHIEIAPNINLYLNEIESTNKPIKIKKANKKASKGDVSFNNEYYRYLETATEDKKESVAGNSNNNIKLEPIQTQPLEDPLKINEDDSKPHRCDICPRTFVTENNLKNHKLLHARTDCTCKICSKRFNTPSALRRHELTHDKNRKIEKRTPASNENSALKCSYCSRTSKNERLAQLHELIHTTTGPYECKVCSKTFPQLGNLRRHGAVHSGYKPHACTLCPKAFSERSHLKSHIRTHTGERPFMCDICSKSFADMSTLKKHAFTHATDRPYVCDVCSKSFCQESRLKRHRASHDVVATGEKPFTCDICFNTYMKVDSLRRHLLIHTGEKKYTCDVCMKSFTQSGTLKVHKLIHSGERPHVCDICFKTFTQVGTMKKHRDAHKTS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511324; iTF_01530942; iTF_01531631;
- 90% Identity
- iTF_01511324; iTF_01530942; iTF_01531631;
- 80% Identity
- iTF_01511324;