Vnig003249.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000005.1:15486905-15488314[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 7 0.026 47 4.8 0.0 14 44 184 214 180 220 0.89 2 7 0.0015 2.7 8.7 0.2 16 45 270 296 266 303 0.77 3 7 0.0027 4.8 8.0 0.2 21 43 300 322 292 331 0.86 4 7 0.016 28 5.5 0.4 15 50 322 357 320 359 0.83 5 7 0.00026 0.47 11.2 0.3 21 52 356 387 352 389 0.92 6 7 0.079 1.4e+02 3.2 0.1 21 44 412 435 402 445 0.83 7 7 0.28 5.1e+02 1.5 0.0 21 44 440 463 435 468 0.81
Sequence Information
- Coding Sequence
- ATGGAATATGACGTGCCAATGCATCAAGATCGTTGTTCTAGTCAAGAAACGGAAAGTGATTTTTTGAGTGTCGTTATCAAATGCGAGAAAGCGGAAACGAGTGATTCAGACAATTCCAATATCGACAAAGAAACCGATCTAAGCCTCGCAGACACTGAAATCGATTCCAAACCTCATATTATGTTGAATGCGTCTAAAACTAGCGAACAATCGTGTTTAAATGGAAACTTGCAAATAAAACAAGAATTTGTTACTTATCAAGGAACAGGTCATACGAATGTCGtcattaaaaaagaagaaacggAAATGTGTTGGCCGGAGAGTACATTTTATTACAAAGATGCGAACAACTGGTCCATGAATAGTCGTAACGAACAATCCAATTTCAATGTTTCAAATGTAAGAGTGAGTGTAAATTGCGATCCTGTAGTAACAGAGACTTGCGTAAAACAAGAAAATGAAGTGAACGTTAACCCGTCGTTCACGACGCTTAGCGACGACACCGAAAAAGACAGTGGAAATGATCGCTCCGTGTCAGTAAACGGAAGAAAAACACGACTTAAAAATCAAAACGAAACGTTAGGGCAATGTGGCATCTGTGACAAGACTTTCACCCGGCCAGGTAATTTAAAAAGTCACATTCTTAAACATGCTGAGGGTAAAACACATCAATGTGACGAGTGCAAGAAGATTTGTTCGAGttcacatttattaaaaattcacaGGCGAATCCACACTGACAAGAAATTACATCAATGTGACACCTGTAATAAAAGTTTCACCCTTCTAAGCTATTTAAATAGGCACAAACGCAGGCATACCGGTGAACAGGCATCGAAATGCGATATTTGCTATAAGAGTTTTACTAATCTCAAGAGACACAAACGTGTGCATACTGACGAAAAGCCGTATCAATGCGTCATTTGTAGCAAGGCGTTCAAGCAATCAAATGAATTAAGTAAACACAGAGTAAcgcataccggtgagaaaccataccagtgcgATATATGCAGTAAGTGTTTCACACAACGCGTATCCCTAAAAGCACATAAACGCTTGCATTCaggtgagaagccgtatcagtgtgacgtgtGCTACAAGAGTTTCACCCACCTGTGCAATTTACGCACGCACAAACTTCTGCATACGGGCGCGAAACCACATAAGTGCGACGTGTGCAATAAGAGTTTCAAACAGTTGAGCCATTTGAAGGGtcacaaacgcacacataccggtgagaaaccgtatcggTGTGACGTTTGCGACAAGACTTTCAATCAGTCGTGTCATTTGAGTGATCACAAACGTAcgcataccggtgagaaaccatatctaTGCGACATTTGCGACAAGACTTTCACCCGGCCAGGCAATTTAAATAGTCACAAACGTACTACACATACTGATTGA
- Protein Sequence
- MEYDVPMHQDRCSSQETESDFLSVVIKCEKAETSDSDNSNIDKETDLSLADTEIDSKPHIMLNASKTSEQSCLNGNLQIKQEFVTYQGTGHTNVVIKKEETEMCWPESTFYYKDANNWSMNSRNEQSNFNVSNVRVSVNCDPVVTETCVKQENEVNVNPSFTTLSDDTEKDSGNDRSVSVNGRKTRLKNQNETLGQCGICDKTFTRPGNLKSHILKHAEGKTHQCDECKKICSSSHLLKIHRRIHTDKKLHQCDTCNKSFTLLSYLNRHKRRHTGEQASKCDICYKSFTNLKRHKRVHTDEKPYQCVICSKAFKQSNELSKHRVTHTGEKPYQCDICSKCFTQRVSLKAHKRLHSGEKPYQCDVCYKSFTHLCNLRTHKLLHTGAKPHKCDVCNKSFKQLSHLKGHKRTHTGEKPYRCDVCDKTFNQSCHLSDHKRTHTGEKPYLCDICDKTFTRPGNLNSHKRTTHTD
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511241;
- 90% Identity
- iTF_01511241;
- 80% Identity
- iTF_01511241;