Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000025.1:2397260-2422889[+]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.0009 1.6 9.5 0.1 20 52 445 477 439 478 0.89

2 11 0.0042 7.5 7.3 0.1 21 52 536 567 529 568 0.89

3 11 0.0009 1.6 9.5 0.1 20 52 625 657 618 658 0.89

4 11 0.0038 6.9 7.4 0.1 20 44 715 739 708 747 0.84

5 11 0.037 65 4.3 0.0 22 48 745 771 741 775 0.84

6 11 0.12 2.2e+02 2.6 0.1 21 48 772 799 767 804 0.85

7 11 0.071 1.3e+02 3.4 0.0 21 48 828 855 825 860 0.85

8 11 1.4 2.4e+03 -0.7 0.1 21 50 884 912 882 916 0.84

9 11 4.7 8.4e+03 -2.4 0.1 22 44 913 935 898 943 0.83

10 11 0.21 3.8e+02 1.9 0.3 21 52 1132 1163 1122 1165 0.82

11 11 1.9 3.3e+03 -1.1 0.0 21 37 1160 1176 1156 1195 0.67

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.0009	1.6	9.5	0.1	20	52	445	477	439	478	0.89
2	11	0.0042	7.5	7.3	0.1	21	52	536	567	529	568	0.89
3	11	0.0009	1.6	9.5	0.1	20	52	625	657	618	658	0.89
4	11	0.0038	6.9	7.4	0.1	20	44	715	739	708	747	0.84
5	11	0.037	65	4.3	0.0	22	48	745	771	741	775	0.84
6	11	0.12	2.2e+02	2.6	0.1	21	48	772	799	767	804	0.85
7	11	0.071	1.3e+02	3.4	0.0	21	48	828	855	825	860	0.85
8	11	1.4	2.4e+03	-0.7	0.1	21	50	884	912	882	916	0.84
9	11	4.7	8.4e+03	-2.4	0.1	22	44	913	935	898	943	0.83
10	11	0.21	3.8e+02	1.9	0.3	21	52	1132	1163	1122	1165	0.82
11	11	1.9	3.3e+03	-1.1	0.0	21	37	1160	1176	1156	1195	0.67

Sequence Information

Coding Sequence: ATGATGAAACAAACAATGCAGTTGGTTGAGGATTCGGTACAAGAAGTGGAGAAAATTTCGTCTGGAGCAAGCACATCAAACTCAGCAAAGATAATCGTGAAACGTGAAACTCAAACGACAGAGGAAACCCTTGTAAAAGCAGAAGTGTTTCAATCAATAAAACAAGAATTTCCGGTCAGCACTAATCTACTCCATGGCAACATGAAACAAGAACCAACAGACGACAGTTCAATAAATCAAACAAACGAACATCAAGGCATTCATTGCGCTACTGAAACAATTGACAGTATATATATTAAACAGGAGTATAGCGACACCGATATGAAGTTAGATATAGATCCCAGAAATGATGTGAACatgataaatataaataacggCATAATAAAACAAGAGATAGATGATGACAGCTTGCAAAAatataattatataaaaatatatgaaccAATAACAGCTGCCGAACATTCAATAGTGTATAAAGCTTGGAAAAGACATGAAAACTTTGAAAAAGCTAAACCAAAAACAAGTGCCGAACGTATGAGAGCATATAGAGCGCGGAAAAGATCTGAAAAGCCtgaaaaaaccaaacaaaaattaacaaatgctGAACGTATGAAAGCTTATAGAGCTCGGAAAAGAgctgaaaaatttgaaaaagctaagccaaaaacaggtgccgaacGTATGAAAGCATACAGAGCTCGTAAACGAGCTGAAAAGGCTGAAAAAGCAAAACCGAAAAAAACAGGTGCTGAACGCATGAAGGCGTATAGAGCTCGGAAAAAAGCTTTGCAAATCTCTGAAAGGCCTGAAAAAGCTAAACCAAAAACGTCTACGGAACGCGTAAGAGAGTTTCGTGATCGCAAACGACAGCAACTGGAATCAAATCAGTCGCATTCAACTGGAAAGAAGCAAGACACAAACGTAATTAATAATAGACCAGAAAGCAACTCACAACTGAgGATAACCTTAAACAATGAAACTCAAACGAAAGAGGACAGTATTATGAAATCAGAAGGGCTGAATAACGTTGAAACAGTGTGGTTAAAAACTGcagaagaaaaatcaaaaaaacaagaACTCTCAGTCAACACTAATCTACTGCAAGTCAATATAAAAGAAGAACATCAAGACAGCGATTGCGCTGCTGAAACAATTGACAGTTTATACGTTAAACAGGAGAATGGCGACACCGATATGAAGTTGGATAATGATACCAACTTTATAGACACAAAAAATGAGATCATAATAAAACAAGAGAAGCATGACGACAACTTGAGTAATGAGGACGATTTTAGCAACGAAAATATTGCCCAATCAAACCCTCAAATACATACTAGCGAGAAACCGTTTCAGTGCGATGTCTGTAATAAAAGCTTCGTTAAGGAGCGTAATTTAAGAATCCACAAACAGCTACATTCTGGGAAGAAACCATTATACGTTAAACAGGAGTATGGCGACACCGATATAAAGTTGGATAATGATACCAACGTTATAGACATAAAAAATGAGGTCATAACAAAACAAGAGAAGCATAACGACAACTTGAGTACTGAGGACGATTTTAGCAATGAAAATATTGCCCAATCAAACCATCAAATACATACTAACGAGAAACCGTTTCAGTGCGATGTCTGTAATAAAAGCTTCGTTAAGGAGCGTAATTTAAGAATCCACAAACAGCTACATTCTGGGAAGAAACCATTTTACGTTAAACAGGAGTATGGCGACACCGATATGAAGTTGGATAATGATACCAACGTTATAGACATAAAAAATGAGGTCATAACAAAACAAGAGAAGCATAACGACAACTTGAGTACTGAAGACGATTTTAGCAACGAAAATATTGCCCAATCAAACCATCAAATACATACTAGTGAGAAACCGTTTCAGTGCGATGTCTGTAATAAAAGCTTCGTTAAGGAGCGTAATTTAAGAATCCACAAACAACTACATTCTGGGAAGAAACCATTATACGTTAAACAGGAGTATGGCGACACCGATATGAAGTTGGATAATGATACCAACGTTATAGACATAAAAAATGAGGTCATAACAAAACAAGAAAAGCATAACGACAACTTGAGTACTGAGGACGATTTTAGCAATGAAAATATTGCCCAATCAAACCCTCAAATACGTACTAGCGAGAAACCGTTTCAGTGCGATGTCTGTAATAAAAGCTTCGTTAAGGAGCGTAATTTAAGAATCCACAAAATAGTACATTCTGGAAAGAAACCACATACATGTGACGTTTGTGACAAAAGCTTCGCACaagtatataaattaaaaaggcATAAAGCAATACATACAAATGAGAAACCGTTtgaatgtgacgtttgtaaaattaGTTTTAGATGCTCGTCCACTTTAAAGGAACATAAATTTCTtcatactggagagaaacctCACAAGTGTGAATATTGTAAAAAGAGTTTTTCACGATTATCATATTTAAAACAACATATAGTTATACATACCAATGAGAAACCAttcaaatgtgacgtttgtaaaattaGTTTTAGATCCTCGTCCACTTTAAAGGAACATAAATTTCTtcatactggagagaaacctCACAAGTGTGAATATTGTAAAAAGAGTTTTTCACGATTATCATATTTAAAACAACATATAGTTATACATACCAATGAGAAACCAttcaaatgtgacgtttgtgaaaaATGCTTTCCTCATTTGAGCAACTTATCACAACACAAAAAACTCCATTTAGCTGAGAAAGGTTATCAATGCGACGTTTGCAATAAGCGCTTTGCCCAGGCAAGCAATTTGAATATTCACAAACGTACGCATACTGGCGTGAAACCATATGGTTGTGACGTTTGTGGTAAACGATTTAATGGGACTAGCCTTTTAAAAACTCACAAACGAACGCATACTGGCGTTcgaccgtatcagtgtgacgtttgtgataAGCGGTTTACAGCTGGACACAATTTAAATGCTCACAAACGTATACATGCCGGTTTGaatcagtgtgatatttgtaataagTTCTTTTCCCATGAAAACAGTTTGGCCACTCACAAACTTAATCATACTGGCGAGAATCCCTATCGGTGTGACGTCTGTGGTATGTGCTTTACCCAGCTGGAAAAGGATATGGACAACTTCATGAAATGGAAAATGATGGGTGGATGTATAAGGATTAAACGGGAAGTTGTACCGCATATTTTCGAATGTCAACGTCCATCTATTGCCGATGAATATGGCGACACCGATCTGAACTTGCCTACAGATTCTgatgatgatgccaacttgatAGACATAAAAAATCACGTCATTATAAAACAAGAGAAGCACGACGACAATTTTCGTACTGACGATAATCTTAGTAACGATGATTTTCCCGAATCAGAACCTCAAAAGTTTAACGAAAACCCGTATCAGTGTGAAGTTTGCAATAAACGCTTCGTTCAAATACGTCATTTAACAAATCACAAACGTTtacatactggagagaaaccatatcatTGTGACATTTGTGACAAACGATTTTCGCAgAGCTTTAGAACCGAGTCCAGTTTAAAGAAACATAAACGACTTCATACTGGAGATAAGCCCAATGAGTGTTCACCATACACATCGAATCTAATTAACATAAAATCAGTTCCAATGGAGGCTGACGATGCAGATTTCAGACACTTTCTTTTTAAAGAAGAAGATTCTTCAAGTTCAAGTACCATCAGGCCATCACAGACTCGACCTTCTATGGAATTGGAACTAGCACCTGATGATATTAACACCGATTCAGATAATGATATGTCATATACGCCCGAGCGAAAATTAGCTCTAAGGAAAAAGAGCCGCATTCCAGACATTTCTCAGGAAATTGATCGAATTAAAAAAGCTAAATTGTCCAAATCGCCAACTGGCGACAGCGACTGTTCTACATCAATGTTGTCAGTGAATGATTCAAGAATAAATGCATGCCCTTATTTAGATGGtgcattttttaaagttctttTCTTTAATGATTCTGAAAGGTTGATATCGACTCAATGCCAGCTGTGTCTTCCAAAACAAGTATTTATTAAAGGTTGCATAGGTGTatcaacaaattttttaaaacatctgaaaaaaatacacGGAGAAAAGGCTGTAATTGATTACaaaagacataaaaaaaataagaggcAAGAAAGGAAAAGTCAGAAGATCGTTGTCGATGAGGATACAAGAAAAGTTGAGAAGGAAATTTTACACTTCCGGAATAATGTCACAGACTGTTCTGGAAAAATCGGAAACATATCTCAAGAAGAATTTGACagtagaataataaaatttattgtaaatacatCAGCTATATCAGTTGTTGATAATGCTTCTTTcattgcaatttttgacggtaTGAATTTCAATGTTATGAATCAAAAAACGGCCAAACGTCACATCAGAACCGAATACGAAGATGTTTGTTCGAAGATTCGGGGGGAATTAGATCACGTTAAGTACGTAGCTACAACTGTAGATATTTGGTGTGCAAAAAGAATACGTTTTTTAGGTATAACATGTCATTGGTTAGACGACAATTTACAAAGACATTCTGTTGCACTGGCATGCAAAAGGCTTCCAGAAAGTCAAACGttctgtaaaataaaagaaatactcGAAGATATACATACGATCTACAACCTGGATGAAGCAAAGATTGTTTGTACTGTGACGGACAATGGAGCTAATTTAGTTGAAGCTTTTAAAGAATCTCGGATTTTCATACAATCATCAATCTACATTTCGAGAGTAGATGAGTTAAACGTACAAGGTTCCGGTACTGATAGTGATGAAGATAGTTGCGAGGAACAAGATGACATATTATTCATACCCGTTGTACcaacaacaaattatatacttcACGACAATCAGAACGACAAAGAGAAAGTAATTTTATCTTTACCCAAACATATTAGATGTGTATCCAAGACATTGACTTCAATTGCTACCACAGACACTCATGAAGTGCTACAAAAAGATGAATCATTAAGGACAAATAATGCGAACGCAATGCAAAAGTGTTCAATGTTGTGGAAAATGGCAAGGAAGCCGAAATGTGCAGCAATTATCCAAAGCACTTTAAACCAGACTTTAAGTTACCCAGTTGTAACTCGATGGAATTCGTTGTACGATTCAATATCACAAATCGTAAAAGAAAAGGTTAAATTGCCCGATTTAttcgttaaattaaatttgagaaaCAGTTGCCTAGAAGAAAatgaaatcaattatttaatggAATGTTGCGAAATCTTTAAACCGCTCGCTCAAGCAATAGATATGTTGCAAGAACAAAATAATACGTATTTTGGATACGTTCTGCCATGTTTAGGatctttgctaaaaaaattcGATAGGTTAAGTGGGACAAAATTAACTTACGCGAGGCCTATTTTAGAAGCTTGCAGAAGAGGGTTGTATAATCGGTTTGAGGCATACTTCACTTTAACATCTGAAGAAGCTAAAGAAGCTATTATTGCCAGCGTAACAATACCGGCTTTCAAAATGCGttggataaacatttttaaagaaactaGTAAGATAGATCTTTTTAAAGAAATTCCAACAATTCTGATAGACGCCTTGAAGAAAGAATGTGGAAATATTGAAAACGAAACAGAGGCTGTGAAAGATACGTCCCTGTCGCAatcagaaaattctttttttgagtTTGAAGATATAGATTTCTCAACGTCTTCCGTTAATAGCGGCAGCgcgattcaaaataaaatggaaattgaAGCCCTTCAATACTTAAGTGATGAAGCTACGGATTTGCAGTCAATTCATAAGTTCCCTAATgtgaagaaattatttttaaaatataacactATTCTTACTTCATCGGTTCCtgtggaaaaattattttccttcTCCGAAATTGTGAATGCTTCTCAAAGACACGCTCTTAGTGATAAGAATTTTGAATTGTTAGTGCTTTTGAAAGCGAACGATTTGTTTTTTAAGTAG
Protein Sequence: MMKQTMQLVEDSVQEVEKISSGASTSNSAKIIVKRETQTTEETLVKAEVFQSIKQEFPVSTNLLHGNMKQEPTDDSSINQTNEHQGIHCATETIDSIYIKQEYSDTDMKLDIDPRNDVNMININNGIIKQEIDDDSLQKYNYIKIYEPITAAEHSIVYKAWKRHENFEKAKPKTSAERMRAYRARKRSEKPEKTKQKLTNAERMKAYRARKRAEKFEKAKPKTGAERMKAYRARKRAEKAEKAKPKKTGAERMKAYRARKKALQISERPEKAKPKTSTERVREFRDRKRQQLESNQSHSTGKKQDTNVINNRPESNSQLRITLNNETQTKEDSIMKSEGLNNVETVWLKTAEEKSKKQELSVNTNLLQVNIKEEHQDSDCAAETIDSLYVKQENGDTDMKLDNDTNFIDTKNEIIIKQEKHDDNLSNEDDFSNENIAQSNPQIHTSEKPFQCDVCNKSFVKERNLRIHKQLHSGKKPLYVKQEYGDTDIKLDNDTNVIDIKNEVITKQEKHNDNLSTEDDFSNENIAQSNHQIHTNEKPFQCDVCNKSFVKERNLRIHKQLHSGKKPFYVKQEYGDTDMKLDNDTNVIDIKNEVITKQEKHNDNLSTEDDFSNENIAQSNHQIHTSEKPFQCDVCNKSFVKERNLRIHKQLHSGKKPLYVKQEYGDTDMKLDNDTNVIDIKNEVITKQEKHNDNLSTEDDFSNENIAQSNPQIRTSEKPFQCDVCNKSFVKERNLRIHKIVHSGKKPHTCDVCDKSFAQVYKLKRHKAIHTNEKPFECDVCKISFRCSSTLKEHKFLHTGEKPHKCEYCKKSFSRLSYLKQHIVIHTNEKPFKCDVCKISFRSSSTLKEHKFLHTGEKPHKCEYCKKSFSRLSYLKQHIVIHTNEKPFKCDVCEKCFPHLSNLSQHKKLHLAEKGYQCDVCNKRFAQASNLNIHKRTHTGVKPYGCDVCGKRFNGTSLLKTHKRTHTGVRPYQCDVCDKRFTAGHNLNAHKRIHAGLNQCDICNKFFSHENSLATHKLNHTGENPYRCDVCGMCFTQLEKDMDNFMKWKMMGGCIRIKREVVPHIFECQRPSIADEYGDTDLNLPTDSDDDANLIDIKNHVIIKQEKHDDNFRTDDNLSNDDFPESEPQKFNENPYQCEVCNKRFVQIRHLTNHKRLHTGEKPYHCDICDKRFSQSFRTESSLKKHKRLHTGDKPNECSPYTSNLINIKSVPMEADDADFRHFLFKEEDSSSSSTIRPSQTRPSMELELAPDDINTDSDNDMSYTPERKLALRKKSRIPDISQEIDRIKKAKLSKSPTGDSDCSTSMLSVNDSRINACPYLDGAFFKVLFFNDSERLISTQCQLCLPKQVFIKGCIGVSTNFLKHLKKIHGEKAVIDYKRHKKNKRQERKSQKIVVDEDTRKVEKEILHFRNNVTDCSGKIGNISQEEFDSRIIKFIVNTSAISVVDNASFIAIFDGMNFNVMNQKTAKRHIRTEYEDVCSKIRGELDHVKYVATTVDIWCAKRIRFLGITCHWLDDNLQRHSVALACKRLPESQTFCKIKEILEDIHTIYNLDEAKIVCTVTDNGANLVEAFKESRIFIQSSIYISRVDELNVQGSGTDSDEDSCEEQDDILFIPVVPTTNYILHDNQNDKEKVILSLPKHIRCVSKTLTSIATTDTHEVLQKDESLRTNNANAMQKCSMLWKMARKPKCAAIIQSTLNQTLSYPVVTRWNSLYDSISQIVKEKVKLPDLFVKLNLRNSCLEENEINYLMECCEIFKPLAQAIDMLQEQNNTYFGYVLPCLGSLLKKFDRLSGTKLTYARPILEACRRGLYNRFEAYFTLTSEEAKEAIIASVTIPAFKMRWINIFKETSKIDLFKEIPTILIDALKKECGNIENETEAVKDTSLSQSENSFFEFEDIDFSTSSVNSGSAIQNKMEIEALQYLSDEATDLQSIHKFPNVKKLFLKYNTILTSSVPVEKLFSFSEIVNASQRHALSDKNFELLVLLKANDLFFK

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511092;
90% Identity: iTF_01511092;
80% Identity: iTF_01511092;