Vnig010194.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- mnm-2
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000025.1:1485000-1487105[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 0.0085 15 6.4 0.1 22 46 243 267 219 273 0.86 2 14 0.086 1.5e+02 3.1 0.0 21 44 270 293 265 297 0.88 3 14 0.12 2.1e+02 2.7 0.1 21 43 298 320 293 326 0.89 4 14 0.026 47 4.8 0.0 21 46 326 351 318 357 0.82 5 14 0.0099 18 6.1 0.1 21 47 354 380 349 386 0.85 6 14 0.22 3.9e+02 1.8 0.1 21 46 382 407 377 413 0.82 7 14 0.015 27 5.5 0.0 21 47 410 436 397 442 0.85 8 14 0.33 5.8e+02 1.3 0.1 21 43 438 460 433 469 0.82 9 14 0.11 1.9e+02 2.8 0.1 21 51 466 496 461 499 0.86 10 14 1.1 1.9e+03 -0.4 0.1 23 43 496 516 481 521 0.85 11 14 0.0026 4.7 8.0 0.0 21 47 522 548 514 554 0.85 12 14 0.032 58 4.5 0.1 21 47 550 576 545 582 0.85 13 14 0.45 8e+02 0.8 0.1 21 43 578 600 574 604 0.84 14 14 0.12 2.1e+02 2.7 0.1 21 44 606 629 595 633 0.86
Sequence Information
- Coding Sequence
- ATGGAAAAAATATTGGCAAATGGCATCGACTTAAGTACAATGTGTCGATTGTGCTTATCAAGAGGCGTTTCGCAGTTAAATATATTTCACTTTTCAGCCGGATCTATGGATCAAGTAGCCGATGTAATTATGAAGTGTGCTCCGGTTGAGATAACGAGATACGATGAGATGCCGAATTTCATCTGCCAATCATGTTACAATCAACTGGAGAAAAGTTACCAGTTCCAGAAGCAAATAGTGGAGTCTGACAAAACACTGCGCCGGTATCTACAGCAACTACAAACTTCTAACAAACAGATCAAGGCTGAATGCCATCAGGGACCTTCTGAGAAGTCTTTAATTCATGCCACTAATGGAGCTATAAAGATTAAAAGTGAATCTTCAGAAATTCAAGACGTGTCTGATATTAATGTCAACTTGAAAGAAGAGATGCCTTCAAATTATACTACTGCATATATATTACACGAGGAAGTAgatttaaaatctgaaattaaagaaGAACCGATAAATGATTATTCATCAATTCCAAGGGAATGTACTGATAATTTAATAGACACTTCATCCGAGGGCGACGATGGTATCGAAATAAAGTCAAAAAACTCAGAAATCGAAGGACAATCAGATAATATTCACATCCTTAGAGCGAAGCTGTATcattgtgacgtttgtaaaaaaagtttcagccGATCAGATAGTTTGACGAATCATCAGCGCATACATACTGGTAAGAAGCCatttcagtgtgacgtttgtaataagagtttcagtCAATCTGCTAATTTGAAAACACATCAACgagtacatactggtgagaagccatatcagtgtgacatttgtaataagagtttctctgATTCAGGTGctttgaaaaaacatcatcgcgtacatactggtgagatgccgtatcagtgtgacatttgtaataagagtttttcTAATTCAAATGctttgaaaaaacatcatcgcgcacatactggtgagaagccgtatcagtgtggcatttgtaataagagtttctctcattcaggtgatttgaaaaaacatcatcgcgtacatactggtgagaagccgtatcagtgtgacatttgtaataagagtttcagtCGATCTGTTAATTTGAAAACACATCAACgagtacatactggtgagaagccgtatcagtgtgacatttgtaataagtattTTAGCGAATCAGGTCATTTGAAAATACACCAGcggattcatactggtgagaagccgtatcagtgtgacatttgtaataagagtttctctcAATCAGgtggtttgaaaacacatcatcgcgtacatactggcgagaagccgtatcagtgtgacatttgtaataagagtttcagcaTATCAGATCAATTGAAAACACATCAGTggattcatactggtgagaagccgtatcagtgtgacgtttgtaataagagttgcTTTCATTCAagtgatttgaaaaaacatcatcACGTACATACTGGTGtgaagccgtatcagtgtgatatttgtaataagagtttttgTAATTCAAGTGCTTTGAAAACACATcatcgcgtacatactggtgagaagccgtatcagtgtgacatttgtaataagagtttctctcaatcaggtgatttgaaaaaacatcatcgcgtacatactggtgagaagccgtatcagtgtgatatttgtaataagagtttttcTAATTCAAGTGctttgaaaaaacatcatcgcgtgcatactggtgagaagccgtatcagtgtgacatttgtaataagtattTTAGCGAATCAGGTCATTTGAAAATACACCAGCGGACTCATACTGGTGAcaagccgtatcagtgtgacgtttgtaataagatttTCTGTGATTCAAGTactttgaaaaaacatcatcgcgtacatactggtgagaagtgA
- Protein Sequence
- MEKILANGIDLSTMCRLCLSRGVSQLNIFHFSAGSMDQVADVIMKCAPVEITRYDEMPNFICQSCYNQLEKSYQFQKQIVESDKTLRRYLQQLQTSNKQIKAECHQGPSEKSLIHATNGAIKIKSESSEIQDVSDINVNLKEEMPSNYTTAYILHEEVDLKSEIKEEPINDYSSIPRECTDNLIDTSSEGDDGIEIKSKNSEIEGQSDNIHILRAKLYHCDVCKKSFSRSDSLTNHQRIHTGKKPFQCDVCNKSFSQSANLKTHQRVHTGEKPYQCDICNKSFSDSGALKKHHRVHTGEMPYQCDICNKSFSNSNALKKHHRAHTGEKPYQCGICNKSFSHSGDLKKHHRVHTGEKPYQCDICNKSFSRSVNLKTHQRVHTGEKPYQCDICNKYFSESGHLKIHQRIHTGEKPYQCDICNKSFSQSGGLKTHHRVHTGEKPYQCDICNKSFSISDQLKTHQWIHTGEKPYQCDVCNKSCFHSSDLKKHHHVHTGVKPYQCDICNKSFCNSSALKTHHRVHTGEKPYQCDICNKSFSQSGDLKKHHRVHTGEKPYQCDICNKSFSNSSALKKHHRVHTGEKPYQCDICNKYFSESGHLKIHQRTHTGDKPYQCDVCNKIFCDSSTLKKHHRVHTGEK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511014;
- 90% Identity
- iTF_01511014;
- 80% Identity
- iTF_01511014;