Vnig007187.1
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- Trl
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000015.1:5049672-5052036[-]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 0.57 1e+03 0.5 0.0 32 46 165 179 141 181 0.80 2 2 2.1e-13 3.8e-10 40.3 0.4 12 44 249 281 245 285 0.94
Sequence Information
- Coding Sequence
- ATGGGTAGCATTCAGCAATATAGCCTGACTTGGGGTGAATACGGAACTTCTCTTCTGTCAGTTGTGCGACTTCTACGAAATCACGGTGATCTTGTCGACGTGACACTATCAGCTGGGGGTCAAAATTTCCAAGCTCATAAAGTCGTTCTCAGCGCCGCTAGTCCTTTGCTATTGGAACTATTGAAGAGCACTCCATGTAAGCATCCAGTTTTGATGCTCGCTGATGTGTCTGCGTCCGACTTGGAAGCTCTGATAGAATTCATGTATCACGGTGAGGTCAGTGTTGACACAAATCAACTGCCGTCGTTGTTGAAAGCAGCACAGTGCCTCAACATTCAAGGTCTCTGCTTTGCCGAAGGATCGAAAACCGACgataatttgaataattcagTGAAAGATGTTTTGAATAGCGTGACTTCTGAAGATACTTCACAGAGCAATACGTCAGAATATGATGAAACATGTGTTCAGGAAAACACGAGTACAGATGCTTCAGTGAAACGTCGTAAACGGCACAAAAGAAGACATTTTGATATCGAATCTCAAAATGGAAGTGAGAAATTAGCACGACAAAGTGATATTGAAAATTGGCAATCCACTGATATGAATACAGGCattgataattttattgataatgCAACCGGAAGCAACAGTCAGGTCAACAGCAATGAAGAAActaccaaaattaatgtttGTGATACAATGACAGTACCTGTGAGTCCGATCACTCCTCAGGTGATTACGACTCATATACCGAAAAATCGCGGTGCATCGGACCAACCAGGGGCATGTCCTTTATGTGGAGCAATGTTAAGACAAGCAAGAAATCTTCGTCGTCATCTAGTCACTAGTTGTAAATACAGATTTAATACTCTACCACCCGAAGATACAAAATCTACCGCTAAATCAGTACCTATACCAAATTTATCTGAAACGATTTTTTCACCTGACAATGTCAAATATTCTTGCAAGAAAGATCAGTACAGTCATCTTCAACATTTACAACCGGTTGCCGTGTTACATAATCTGACTAGCGATTCCACAAATATTATTGATTTGAAGCCTGTTCCGATGGatttaattccaaatccaaacGATGAAACATTATCACcttga
- Protein Sequence
- MGSIQQYSLTWGEYGTSLLSVVRLLRNHGDLVDVTLSAGGQNFQAHKVVLSAASPLLLELLKSTPCKHPVLMLADVSASDLEALIEFMYHGEVSVDTNQLPSLLKAAQCLNIQGLCFAEGSKTDDNLNNSVKDVLNSVTSEDTSQSNTSEYDETCVQENTSTDASVKRRKRHKRRHFDIESQNGSEKLARQSDIENWQSTDMNTGIDNFIDNATGSNSQVNSNEETTKINVCDTMTVPVSPITPQVITTHIPKNRGASDQPGACPLCGAMLRQARNLRRHLVTSCKYRFNTLPPEDTKSTAKSVPIPNLSETIFSPDNVKYSCKKDQYSHLQHLQPVAVLHNLTSDSTNIIDLKPVPMDLIPNPNDETLSP
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01510889;
- 90% Identity
- iTF_01510889;
- 80% Identity
- iTF_01510889;