Vnig003097.2
Basic Information
- Insect
- Venustoraphidia nigricollis
- Gene Symbol
- -
- Assembly
- GCA_034508555.1
- Location
- JAVRKA010000005.1:12168813-12170918[+]
Transcription Factor Domain
- TF Family
- zf-GAGA
- Domain
- zf-GAGA domain
- PFAM
- PF09237
- TF Group
- Zinc-Coordinating Group
- Description
- Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 1.8 3.2e+03 -1.1 0.0 23 35 58 70 52 76 0.76 2 11 0.013 24 5.7 0.4 21 48 270 296 261 298 0.87 3 11 0.00071 1.3 9.8 0.2 21 43 298 320 293 329 0.87 4 11 0.35 6.3e+02 1.2 0.1 22 43 327 348 323 353 0.85 5 11 0.00027 0.47 11.2 0.1 21 43 354 376 352 381 0.91 6 11 0.028 50 4.7 0.1 21 43 382 404 378 409 0.90 7 11 0.0083 15 6.4 0.1 21 43 410 432 405 437 0.89 8 11 0.034 61 4.4 0.3 21 43 438 460 435 464 0.90 9 11 0.00049 0.88 10.3 0.0 21 43 466 488 461 493 0.92 10 11 0.0013 2.3 9.0 0.0 21 47 494 519 489 522 0.87 11 11 0.053 94 3.8 0.5 21 43 522 544 517 549 0.85
Sequence Information
- Coding Sequence
- atgaaacaaataaaaataactggCAATGGTTTAACTCAAATGTGTAGATTATGTCTATCAAGCGATATGGCTATGACTGATATATTTAGTATTTCCTCagaattcataaaaaaactagCAGATATAATAATGGAGTGTGCTCCCGTTCATATTGCCAGACACGACGAGATGCCGCCTTATATTTGTCAAATATGTTTCACTCAATTGAAGAAATTTCACCAGTTCCAAATGCAAATAGTACAATCTGATAAAGCACTGCATCGCTATCTGCAGCAGTTGAACGATTCTCATCCGCAGATAAATGTTGAATTGGCCTTCGCAGAACACTCTAATATTCCCGAAAGCCAGAATGCCATTCTAAAAAATGAACCTTTTGAAATTAGTGATGAGTTTGATACTTTGTTTTCAAAACAGAAAGTGTTGGAAAATTTAAGTTCAGCAAATAAAGTTAACGAtgaaatatctttaaaactCGAGATCAAAGATGAATCAATGGGTGATAATTGTTCAATTCCTGCAGTAGAAACTCCATCTGTGTGTGATAGTGAAATCAGTTGCGAAGTTTCAACGATCGAATTTACCGATACAAAAGTAGGTATCTTAGAGTGTTTGattaaatttgaaaaggatATGACTGAAAAATCACCGATGAAATCGGAGCAAACTTCAATAACGTTTAAAGAAGACGATAGAAGCCTGCATcccgaaaatattaaagacgtGGAGAGTCTTCGCTATAATGaagataatttacaaaaaaatgaacgtcaaaaattaaacgaaaagtTTCATCAATtgaaacatacaggagagaaaccataccagtgtgacatttgtcaactCTGTTTCAACCGAGCTCATAGTTTAAAAagacataaattaaaacatacaggagagaaaccgttccagtgtgatatttgtaaaatgtgttataCACAATCGAGCAGTTTAAAAAGGCATCAATTAAATCATACTGGAGAGAAATCCCACCAATGTGGCGTTTGTAAAAGCCGTTTCAGACAtttggaaaatttaaataaacatagttTAATGCATAcgggagagaaaccataccagtgtgatatttgtaaaatgtgttttacaCAATCCAAAAGTTTAAAAAGACATAAATTAGTACATACAgaagagaaaccgtaccagtgtgacatttgtaaaaagggTTTTAGGCGAGCATCTCATTTAAGAGATCATAAATttaaacatacaggagagaaaccgtaccaatgtgatatttgtaaaatgtgttttacaCAATCGAGCAGTTTAAAAActcataaaataatacatacaggagagaaaccgtaccagtgtgacatttgtaacgTGTGTTTCAGGCGAGcgtatgatttaaaatatcataaaattatacatactgaagagaaaccgtatcaatgtgatatttgtaaaatgtgttttaaacaaTGGAGgaatttaaaaatgcataaatttacacatacaggagagaaaccgtaccagtgtgatgtttgtaaaaagCGTTTTAAACAATCGAGGAGTTTAAAagatcataaattaaaacatacaggggagagaccatatcagtgtgatatttgtaaaatgtgtttcagacATAATGTTTCTCTAAAAAATCATCAATTGAAACATACAGAATAG
- Protein Sequence
- MKQIKITGNGLTQMCRLCLSSDMAMTDIFSISSEFIKKLADIIMECAPVHIARHDEMPPYICQICFTQLKKFHQFQMQIVQSDKALHRYLQQLNDSHPQINVELAFAEHSNIPESQNAILKNEPFEISDEFDTLFSKQKVLENLSSANKVNDEISLKLEIKDESMGDNCSIPAVETPSVCDSEISCEVSTIEFTDTKVGILECLIKFEKDMTEKSPMKSEQTSITFKEDDRSLHPENIKDVESLRYNEDNLQKNERQKLNEKFHQLKHTGEKPYQCDICQLCFNRAHSLKRHKLKHTGEKPFQCDICKMCYTQSSSLKRHQLNHTGEKSHQCGVCKSRFRHLENLNKHSLMHTGEKPYQCDICKMCFTQSKSLKRHKLVHTEEKPYQCDICKKGFRRASHLRDHKFKHTGEKPYQCDICKMCFTQSSSLKTHKIIHTGEKPYQCDICNVCFRRAYDLKYHKIIHTEEKPYQCDICKMCFKQWRNLKMHKFTHTGEKPYQCDVCKKRFKQSRSLKDHKLKHTGERPYQCDICKMCFRHNVSLKNHQLKHTE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01511341;
- 90% Identity
- iTF_01511341;
- 80% Identity
- iTF_01511341;