Basic Information

Insect: Venustoraphidia nigricollis
Gene Symbol: -
Assembly: GCA_034508555.1
Location: JAVRKA010000034.1:2654252-2657034[-]

Transcription Factor Domain

TF Family: zf-GAGA
Domain: zf-GAGA domain
PFAM: PF09237
TF Group: Zinc-Coordinating Group
Description: Members of this family bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 14 4.8 8.5e+03 -2.5 0.1 33 44 79 90 59 94 0.61

2 14 0.091 1.6e+02 3.0 0.1 21 44 269 292 264 300 0.86

3 14 0.00042 0.75 10.5 0.2 21 48 297 323 294 325 0.88

4 14 0.0032 5.7 7.7 0.0 21 47 325 351 320 356 0.85

5 14 0.0003 0.54 11.0 0.2 21 48 353 379 349 381 0.88

6 14 0.0059 11 6.8 0.0 21 44 381 404 376 408 0.90

7 14 0.00027 0.49 11.1 0.2 21 48 409 435 404 437 0.87

8 14 0.0034 6 7.6 0.1 21 47 437 463 433 473 0.86

9 14 0.0085 15 6.3 0.6 21 44 493 516 484 520 0.87

10 14 0.24 4.4e+02 1.7 0.2 21 45 521 545 517 552 0.81

11 14 0.00086 1.5 9.5 0.3 21 44 549 572 544 580 0.86

12 14 0.35 6.2e+02 1.2 0.1 22 44 578 600 575 604 0.85

13 14 0.018 32 5.3 0.3 21 44 605 628 600 635 0.90

14 14 10 1.8e+04 -3.5 0.0 21 30 661 670 654 673 0.81

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	14	4.8	8.5e+03	-2.5	0.1	33	44	79	90	59	94	0.61
2	14	0.091	1.6e+02	3.0	0.1	21	44	269	292	264	300	0.86
3	14	0.00042	0.75	10.5	0.2	21	48	297	323	294	325	0.88
4	14	0.0032	5.7	7.7	0.0	21	47	325	351	320	356	0.85
5	14	0.0003	0.54	11.0	0.2	21	48	353	379	349	381	0.88
6	14	0.0059	11	6.8	0.0	21	44	381	404	376	408	0.90
7	14	0.00027	0.49	11.1	0.2	21	48	409	435	404	437	0.87
8	14	0.0034	6	7.6	0.1	21	47	437	463	433	473	0.86
9	14	0.0085	15	6.3	0.6	21	44	493	516	484	520	0.87
10	14	0.24	4.4e+02	1.7	0.2	21	45	521	545	517	552	0.81
11	14	0.00086	1.5	9.5	0.3	21	44	549	572	544	580	0.86
12	14	0.35	6.2e+02	1.2	0.1	22	44	578	600	575	604	0.85
13	14	0.018	32	5.3	0.3	21	44	605	628	600	635	0.90
14	14	10	1.8e+04	-3.5	0.0	21	30	661	670	654	673	0.81

Sequence Information

Coding Sequence: ATGGAAGAAATATCGGTAAATGGCTTCGGCTTAAGTCCAATGTGCAGGTTATGTTTATCAAAAGGCGCTACACTGTTGAATATATTTACCTTTTCAACAAGATTTATGAAGCAATTAGCCGATGTAATTATGGAGTGCGCTCCAGTTCAGATAATGAGATGCGAAGAGATGCCCAATTTCATCTGCCAATCATGTTACAATCAACTGCAGAAAAGTCACCAGTTCCAGATGCAAATAATACAGTCAGAAAAAACACTGCGGCGCTATCTACATCAACTACGGCCTTCGAACAAACAAATCAAAGCTAAATGTACCATTCAGGAGCCTCCTGAGGTTCCTTTAATTCATAACACTAATACAGATATCAAGGTGAAACATGAATCTTTAGGTTTTCGAGACGTTATTGATATTAATGTCAACTCGAAAGAAGAGATGCCTTCGAATTTTTCAGCATACAAAATTAACAAGCAAAAGTCTAtagcatttaaaattaaagatgaacaaatagataataattcatCAATTCCAACGGAATGTACTGACAACATTATAAACACTTTTTCTGAGGGTACCGACGGTGTCGAAaccatgttaaaaaaatcagaaattgaAGAACGACCGGATAACTTTACAAGTATTCCTCCTGCTGATTTACCAGAAAATAGTCGAAAAAATAAGACCAAAAATACTTCGGGATCTCATAAAAAGCGCAAAACATCAAATAAAATGAGATATGAATGTGAAATTTGTAAGAAACATTTTCCTTCTTTAAGCTCCTTTAATATTCACAAGCGTATCCATACTGGTGAAAAGCCATaccagtgtggcgtttgtaataGGAGTTTCAGTCAGTTGGCTCATTTAAGAAAACACCAGCtaatacatactggtgaaaaaccatatcagtgcgACGTTTGTTTCCGGACTTTCAGTCAATCGTGTAATATGAGAAATCACAAACTcaaacatactggtgagaaaccgtatcagtgtgacgtgtGTGATAAGTGTTTTAGATTTTCATGGGATTTGAGAAAGCACCAACGTATACATACTGGAGAAAAGCcatatcagtgtggcgtttgtttCCAGACTTTCACTCAATCGTGTAATATGAGAAATCACAAACTcaaacatactggtgagaaaccgtatcagtgtgacgtgtGTGATAAGTGTTTTAGATTTTCATGGGATTTGAGAAAGCACCAACGTGTACATACTGGAGAAAAGCCATATCAGTGCGACGTTTGTTTCCAGACTTTCACTCAATCGTGTAATATGAGAAATCACAAACTcaaacatactggtgagaaaccgtatcagtgtgacgtgtGTGAGAAGTGTTTTAGATTTTCATGGGATTTGAGAAAGCACCAACGTGTACATACTGGAGAAAAGCcatatcagtgtggcgtttgtaaaaagtgcttcATAGAAttatttgaattgaaaaaacatCAACGCCTACATACTGGCGAGAGGCCTTataagtgtgacatttgtaataagtgttttagTGAATCACGTCCATTGAGAATTCACAAACGCATACACACCGGTGAGcagccgtatcagtgtgacgtttgtaaaaagtgttttgaTGAAGCAGGTCCATTGAGAATCCACAAGcgcatacatactggtgagaaaccgtatcaatgtgacgtttgtctCAAGACTTTCAGGCAGTTGTGTAATATGAGAAAACATCAACTCATACATACTGATgagaagccatatcagtgtgacgtttgtaataagtgtttcaggGATGTGAGCGGTTTTAGAAACCATAAGcgcatacatactggtgaaaagccATATCAGTGTCACGTTTGTAACAAGAGTTTCAGGGATGCGAGCAGTTTTAGAAGACATAAGCGCGTACACACTGGTGAGAAGTCTAATCAACgtgctgtttataataatagttcAAACCGTtcagaaactttaaaaaaatatcaacgtgtacgtactggtgagaagccatatgattgtgacgtttgtaataagcaaTTTACTCGATTGGCCAGTTTCAATAACCACAAGCGAATACACTCGTCAGAGTTTCAAGACGCGATTGGTATTAATGTAAACTTGAAAACAGAGATGTCCTCAAATTACACTTCAGCACACAAAATTAACGAggaaatgtctttaaaatctgaaattaaagaTGATCCAATAGATGATAAATCAGTCATTTCAACGGAATGCACTGATAACTTGATAGAAACTTCGTCTGGAGAAGACGGTAATACAACCAGTTGTGAAATTAAAGAAGAACCGATAGATGATAAATCATTAATTTCGACGAAAGACACTGATAACTTGATAGAAACATCATCTGGAATAGACGGTAATAAAACCAGTTGTGAAATTAAAGATGAAAGATAG
Protein Sequence: MEEISVNGFGLSPMCRLCLSKGATLLNIFTFSTRFMKQLADVIMECAPVQIMRCEEMPNFICQSCYNQLQKSHQFQMQIIQSEKTLRRYLHQLRPSNKQIKAKCTIQEPPEVPLIHNTNTDIKVKHESLGFRDVIDINVNSKEEMPSNFSAYKINKQKSIAFKIKDEQIDNNSSIPTECTDNIINTFSEGTDGVETMLKKSEIEERPDNFTSIPPADLPENSRKNKTKNTSGSHKKRKTSNKMRYECEICKKHFPSLSSFNIHKRIHTGEKPYQCGVCNRSFSQLAHLRKHQLIHTGEKPYQCDVCFRTFSQSCNMRNHKLKHTGEKPYQCDVCDKCFRFSWDLRKHQRIHTGEKPYQCGVCFQTFTQSCNMRNHKLKHTGEKPYQCDVCDKCFRFSWDLRKHQRVHTGEKPYQCDVCFQTFTQSCNMRNHKLKHTGEKPYQCDVCEKCFRFSWDLRKHQRVHTGEKPYQCGVCKKCFIELFELKKHQRLHTGERPYKCDICNKCFSESRPLRIHKRIHTGEQPYQCDVCKKCFDEAGPLRIHKRIHTGEKPYQCDVCLKTFRQLCNMRKHQLIHTDEKPYQCDVCNKCFRDVSGFRNHKRIHTGEKPYQCHVCNKSFRDASSFRRHKRVHTGEKSNQRAVYNNSSNRSETLKKYQRVRTGEKPYDCDVCNKQFTRLASFNNHKRIHSSEFQDAIGINVNLKTEMSSNYTSAHKINEEMSLKSEIKDDPIDDKSVISTECTDNLIETSSGEDGNTTSCEIKEEPIDDKSLISTKDTDNLIETSSGIDGNKTSCEIKDER

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_01511063;
90% Identity: iTF_01511063;
80% Identity: iTF_01511063;